Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq208 192 7e-44 seq69 145 9e-30 seq441 104 3e-17 seq51 89.7 6e-13 >seq208 Length=29794 Score = 192 bits (212), Expect = 7e-44 Identities = 570/865 (66%), Gaps = 23/865 (3%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 || |||| ||| | | |||||||| |||| || || |||||| || || | || Sbjct 13485 CGCGACTTTGAGTACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGTACCTCCTGCGC 13426 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 ||| ||||| || || ||| ||| | ||| | |||| ||||| |||||||| Sbjct 13425 GTCGGTGGCAAGGTCGCTGAGCGCCCGCAGCAGATGATTCTGCGCGTCGCCGTCGGCATC 13366 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 ||| | | ||||| || | | | ||||| ||||| | ||||| ||| | | ||| Sbjct 13365 CACAAGCACGACATCGACGCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTC 13306 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGC 75367 | ||||| || || || || ||||| || || || || | |||||| |||| ||| Sbjct 13305 ACGCACGCGACGCCGACGCTGTTCAACGCCGGCACGCCGCGCCCGCAGCTGTCGTCGTGC 13246 Query 75368 TTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGT 75427 ||||| |||||| ||||| ||||| ||| | || ||||||| || || | | |||| Sbjct 13245 TTCCTGCTCGCCATGAAGGACGACTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGC 13186 Query 75428 GCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAAT 75487 || ||||| |||||||| || || || || | | || | | | || | Sbjct 13185 GCTTGCATCTCCAAGTGGGCCGGCGGCATCGGTGTTAGTGTGCACAACATCCGCGCGACC 13126 Query 75488 AAATCTCGT--ATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCG 75545 || ||||| || || || || || || || | || | | || ||||| |||| Sbjct 13125 AA--CTCGTACATCCGCGGCACGAACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCG 13068 Query 75546 TATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCGT---CGCAAGGGGTCCATCG 75602 | || |||| ||| ||||| ||||| |||| | || || |||||||| || ||| Sbjct 13067 TGTTCAACGACACGGCGCGTTATGTGGATCAGGGTGGCGGTAAGCGCAAGGGCTCGTTCG 13008 Query 75603 CGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGA-GTTACGACTCAAC 75661 || | ||| |||| || ||||| ||||| ||| | |||||||| || | | || ||| Sbjct 13007 CGATGTACCTGGAGCCGTGGCACGCCGACATCTTCGAGTTCCTCGACCTCAAGA-AGAAC 12949 Query 75662 CAAGGTGACGAAGAGGCTCGGTG-TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCT 75720 || || ||| || || | | | | |||||||| | | ||||||| || || || Sbjct 12948 CACGGCAACG-AGCTGCACCGCGCGCGTGATCTCTTCTACGCGATGTGGATCCCCGATCT 12890 Query 75721 TTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACC 75780 ||||||||||| ||||||| || | ||| || ||||| || || |||| || Sbjct 12889 GTTCATGAAGCGCGTTGAGGCCAACGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCGCC 12830 Query 75781 AGGTCTCTCCGACG-CGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGG 75839 ||||||| | ||| || |||||| ||||| || || || ||| |||| || | Sbjct 12829 GGGTCTCTAC-ACGACGTGGGGTGACGAGTTCGAGGCGCTGTACCACCAGTACGAGCGCG 12771 Query 75840 AGGGTAGAGC---CAATGCGA-CTGTAC-CAGCCGCCGATGTTTGGAAGGCTATTCTCAA 75894 |||| | || ||| ||| | | | |||| || | ||| || || ||| | Sbjct 12770 AGGGCCGCGCGCGCAAGACGATCCGCGCGCAGCAGC-----TCTGGTTCGCGATCCTCGA 12716 Query 75895 ATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAG 75954 || |||| ||||| || || || || ||||| |||||||| | || ||| ||| Sbjct 12715 GTCGCAGATCGAGACGGGCACGCCGTACATGCTCTACAAGGACTCGTGCAACCGCAAGTC 12656 Query 75955 TAACCAAAAGAATTTGGGAACAATC 75979 ||||| |||| | || || ||| Sbjct 12655 GAACCAGCAGAACCTCGGCACGATC 12631 >seq69 Length=49210 Score = 145 bits (160), Expect = 9e-30 Identities = 341/503 (68%), Gaps = 14/503 (3%) Strand=Plus/Minus Query 65021 AGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCC-TTCGCCGAG 65079 ||||||||||| | ||||| | || |||| ||| | | | ||| | ||||||||| Sbjct 8696 AGAAGAAGGCGCACTGGGCGCTTAAGTGGTGCGACTCGC-GCCGCGCCGCGTTCGCCGAG 8638 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 || | | ||||| || ||| ||||| ||||||||||| || || |||||| |||| Sbjct 8637 CGTATCGTCGCGTTCGCTGCTGTTGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCTATC 8578 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | ||| | |||||||| || |||||||| ||||| ||||||| || || || || || Sbjct 8577 TTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTGATCTCG 8518 Query 65200 CGAGATGAGGGTCTCCACCAGGAGTTTGCCGTG-GAGCTCTTCAAGACTTTGCGTAATAG 65258 || || |||||||||||| || || | |||| ||| | | || | || | Sbjct 8517 CGTGACGAGGGTCTCCACTGCGACTTCG-CGTGCCTGCTGTACTCGAAGCTCGCCAACAA 8459 Query 65259 ACCCACTACCGAAACT---ATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGG 65315 | | || || || ||||||| ||| | || || |||| ||| ||||| | Sbjct 8458 GCTCCCT---GAGTCTCGCATCCACGAGATCATTCGCGATGCCGTTGCGATCGAGAAGGA 8402 Query 65316 GTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGA 65375 ||| || |||| | ||||| | ||||||||||||||||| |||| | | Sbjct 8401 GTTTGTCCAGGACTCGCTCCCGGTGGAGCTCATCGGTATGAACTCGTCCCTCATGTGCCA 8342 Query 65376 GTACATTGAGTATGTG-TCGGATCGTCTCCTCAAACAAGTTGG-GGTGCCACCCATTTGG 65433 ||||||||||| | || | ||||| |||||| | |||| | ||||| || | Sbjct 8341 GTACATTGAGT-TCTGCGCCGATCGCCTCCTCCACGCGCTTGGTGTTGCCA-AGATCTAC 8284 Query 65434 AACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTC 65493 || | | ||| || || |||| ||||| | || || | || |||||||||||| Sbjct 8283 AAGGTGTCGAACCCGTTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTC 8224 Query 65494 TTTGAGAAGCGAGTTGGGGACTA 65516 || |||||||| || || || || Sbjct 8223 TTCGAGAAGCGCGTGGGCGAGTA 8201 >seq441 Length=17543 Score = 104 bits (114), Expect = 3e-17 Identities = 284/430 (66%), Gaps = 35/430 (8%) Strand=Plus/Minus Query 175275 TGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCT 175334 ||||||||||||||| || ||||| || | || || || || || |||||||| Sbjct 15353 TGGTGCCAAGATCCCGAAGGGTGCCCTGCTTGTCGGACCTCCGGGCACTGGTAAGACCCT 15294 Query 175335 CCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCT-CTGCCGCAA 175393 ||||| || | || |||||| | | ||| |||||| || ||| | | | | | Sbjct 15293 GCTCGCGAAGGCAACGGCTGGTGAAGCTAGTGTGCCATTCTTC-AGTATTTCGGGCTCGG 15235 Query 175394 ACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTT---TGAAA 175450 | || | ||||||||||| ||||||||| | | || |||||| | || |||| Sbjct 15234 ATTTCATTGAGATGTTTGTCGGTGTGGGTCCGTCGCGTGTGCGCGATTTGTTCCGTGAA- 15176 Query 175451 TCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGG-----G 175505 || || | ||| || || |||||||| || ||||| || ||||| || | | Sbjct 15175 --GCTCGTGCAAACTCTCCGTGCATTGTCTTTATCGATGAAATCGATGCTGTCGCTCGTG 15118 Query 175506 CA---AGCAACGCAGCG----CTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAA 175558 || ||||| | | || ||||||||| |||||||| |||| | ||| Sbjct 15117 CACGTAGCAAGGGAACGTTCTCTGGTGGTA---------ATGACGAGCGAGAGAACACAC 15067 Query 175559 TTAATCAACTACTCACCGAGATGGATGGCTTTGAC---AATGAGACTGGCATTGTGGTTA 175615 | || || || || ||||||||| ||||| || | ||| ||| | || || Sbjct 15066 TCAACCAGCTGCTTGTCGAGATGGACGGCTTCAACTCGAGCGAG---GGCGTGGTTGTGC 15010 Query 175616 TTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTG 175675 |||||| || || || || || || || || | ||| | ||||| ||||||||||| | Sbjct 15009 TTGCGGGTACAAACCGTGTCGACATTCTCGACAAGGCCATTCTTCGTCCGGGTCGTTTCG 14950 Query 175676 ATCGCAAGAT 175685 |||| |||| Sbjct 14949 ATCGTCAGAT 14940 >seq51 Length=53042 Score = 89.7 bits (98), Expect = 6e-13 Identities = 247/371 (67%), Gaps = 16/371 (4%) Strand=Plus/Minus Query 14421 AGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACC 14480 || ||||||| ||||| || || || | | ||| || | || | ||||||||||||| Sbjct 40764 AGAATGAAATTAAGGTTGCTCAGCTTGGTGGATACGTATCCGAGCATTCTGCGTACCACC 40705 Query 14481 ATGGTGAAGT-ATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCA 14539 | |||||| | || | ||| ||||||| | || |||| | || | ||| | Sbjct 40704 ACGGTGAACAGAGTCTCAACGG-CACGATTATCAACATGGCCCAAGATTTTGTGGG---A 40649 Query 14540 AACAACATTAACCTTCT--TGAA-CCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGT 14596 | ||||| || || ||| || || ||||| |||||||| || || ||||||| Sbjct 40648 AGCAACAATATCCATCTGTTGTCTCCAAACGGTCAGTTTGGTACTCGACTAGCGGGTGGT 40589 Query 14597 AAGGATGCTTCTCAGACGAGGTACATTTTCACAAAACTTACCAAGGAGGCTCGCAAGA-- 14654 || ||||| | | | | ||||| || || || || | || | ||| || || Sbjct 40588 AAAGATGCAGCATCGCCTCGTTACATCTTTACGAACCT---CGAGCAA-CTCACACGACG 40533 Query 14655 --TCTTTGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCAT 14712 |||| || |||| |||| || | | | | || | ||||||||||||| || || Sbjct 40532 CATCTTCGACCCTCTGGATAACGACAACTTGACATATCTCGACGATGATGGACAGTCGAT 40473 Query 14713 TGAACCAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTAT 14772 ||| || || | || | || | | ||||||| ||||| ||||| ||||||||| Sbjct 40472 TGAGCCTGAATGGTATGTTCCGATCATTCCAATGGCACTCGTCAATGGTGGCGAGGGTAT 40413 Query 14773 CGGTACGGGTT 14783 ||| ||||||| Sbjct 40412 CGGCACGGGTT 40402 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 13550 ACCGGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCTGGAAAGTGT 13609 || || || || ||| | || || |||||| | || |||||||| | || ||| || Sbjct 41752 ACAGGAATCCCAAAGCTTGACGATGCGAACTACGCCGGTACGGCGAAGGCTCAAAACTGC 41693 Query 13610 ACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCTGTC 13669 || || ||| | || ||||| || || || |||||| |||| | || |||||||| Sbjct 41692 ACGCTGATTCTGACTGAGGGCGAGTCAGCCAAAACCTTCGCAATCAGTGGCCTCTCTGTT 41633 Query 13670 GTTGGTCGTGATCACTACGGTGTGTTCCC 13698 ||||| || ||| |||||||||||||||| Sbjct 41632 GTTGGACGCGATTACTACGGTGTGTTCCC 41604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596472210012800