Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq10 120 9e-22 seq871 100 8e-16 seq106 91.5 4e-13 seq650 87.8 5e-12 >seq10 Length=85747 Score = 120 bits (132), Expect = 9e-22 Identities = 202/286 (71%), Gaps = 10/286 (3%) Strand=Plus/Minus Query 302584 TTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGA 302643 |||| | |||||| || || || || ||| || || || || || |||||||| | | Sbjct 81528 TTGACAAGACGACGTTGGATGTAGCCGGTTTCAGCAGTCTTGACGGCAGTATCAATCAAA 81469 Query 302644 CCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATAA 302701 || |||||||||||||||| |||||||| | ||||| ||| || | ||| ||| | Sbjct 81468 CCTTCACGACCACCCATAGCGTGGAAGAAGAACTCTTGCGGG-GTCAATCCCTTCAA-AT 81411 Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTCGGG--CGA-ATCGTCGAACTTGGTAAAGTGTG 302758 | ||| | |||||||||||||| ||| || ||| ||| || ||| |||| | Sbjct 81410 ACGAGTTTTCAACGAAACCACGACTCTCAGGACCGAGATCATC---CTTTCCGTAGTGAG 81354 Query 302759 GCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCA 302818 | || || || | |||| || || ||||||||||| || ||||||||||| |||| Sbjct 81353 GAAGAGTTCTACGGTTGAAGCCATAAGGAATACGCTTTCCTTCGACGTTCTGCTGACCCA 81294 Query 302819 GGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 |||| ||| ||||| || || || | | | |||||||| || Sbjct 81293 CACACGCAATAATCTGGGAGATGTTAATGTAAGATCCCTTGGAACC 81248 >seq871 Length=9524 Score = 100 bits (110), Expect = 8e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 251488 CCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCC 251547 ||||| || |||| ||| || |||||||| || || | ||| |||||||| || || || Sbjct 3233 CCGTGCGAGATCAGACAGTCGCGCTCCATCTCTCCCATACGCAGACCACCTTCTCGCGCA 3292 Query 251548 CTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGC 251607 | |||||| ||||| || || || | || || ||| ||||| || | Sbjct 3293 CGACCCTCCATGGGCTGGCGCGTCAGCATCGTCACGGGGCCGCGCGAGCGCGAGTGGATC 3352 Query 251608 TTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGAT 251660 || || | |||||||||||||||||||||||||| | |||||||||||||| Sbjct 3353 TTGTCGTCGACCATATGCTTGAGACGCTGGTAGAACGTCGGACCGATGAAGAT 3405 >seq106 Length=40908 Score = 91.5 bits (100), Expect = 4e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 354003 CTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTC 354062 ||| || || | ||||| |||||||||||||| || |||||| | || || || || || Sbjct 13699 CTTGATGGCCGAAGCGAGGGCACCAAGCGAGTCGCGATCGAGGTAGTTCGTCGGCTCATC 13640 Query 354063 AAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTG 354122 | || ||| | |||||| | | |||||| || || || || || ||||| |||||||| Sbjct 13639 CATGACAAGGATGTGCGGGTTGAGCCACATGGCAGCGGCAAGGACGACCTTGACCTTCTG 13580 Query 354123 TCCGCCTGATAGTGCGTGAATCTTGGAATATGTACCGAACTGCGATTCAAGGTTGAAATG 354182 || || || || | | || || | |||||||||| | |||| ||| | Sbjct 13579 ACCACCCGAAAGACCACGCATGCGCGAGTGCGTACCGAACTCGGCACCAAGACCGAAGTT 13520 Query 354183 GTCGAGATGTTTCTGTAC 354200 |||||| || ||||| || Sbjct 13519 GTCGAGGTGCTTCTGGAC 13502 >seq650 Length=12661 Score = 87.8 bits (96), Expect = 5e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 354016 GCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACG 354075 || || ||||| |||| | ||||||||| | || || |||||||| || | || | | Sbjct 2472 GCCAGCGCACCGAGCGCCGCGCGGTCGAGGTAGTTGGTCGGTTCGTCGAGCACGAGCAGG 2413 Query 354076 TGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAGT 354135 ||||| || |||||| || || || | || | ||| |||||||||||||| || ||| Sbjct 2412 TGCGGTCGCACCCACATCGCGGCCGCGATCACGAGCTTGACCTTCTGTCCGCCCGAGAGT 2353 Query 354136 GCGTGAATCTTGGAATATGTACCGAACT 354163 || | |||||| || || ||||||| Sbjct 2352 CCGCGGATCTTGCCGTACGTGCCGAACT 2325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471571318921220