Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq208 221 1e-52 >seq208 Length=29794 Score = 221 bits (244), Expect = 1e-52 Identities = 989/1536 (64%), Gaps = 62/1536 (4%) Strand=Plus/Plus Query 138484 TCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAA 138543 || || ||||| || |||| | || | || || || || | || || || ||| Sbjct 11966 TCCTTCATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGTAC 12025 Query 138544 ATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCG 138603 |||||| | ||||| ||||| | ||| |||||||| ||||| ||||| || || | ||| Sbjct 12026 ATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCCAGGATCTGCGCGGTCGACGCC 12085 Query 138604 GTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTG 138663 |||||||| ||| | || || || || || | ||||| || || | ||||| Sbjct 12086 GTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACACCGTACTGCGCGACGCTGGCCTTG 12145 Query 138664 AGCGACGACCAGTCCCACAAATCGC---TAGGTTTTTTGTTCCACATATCGTACTGTAAC 138720 |||| | ||||||||| | || | || | | |||||| |||||||| || Sbjct 12146 AGCGCGGCCCAGTCCCAGAGGCCGGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAG 12205 Query 138721 ATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAAC 138780 || ||| || |||| ||| ||||| |||| || ||| | ||| | | Sbjct 12206 ATGCCCTTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTCGCGAGC 12265 Query 138781 TCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAAT 138840 || | ||||| | ||| || |||| | || ||| || | || |||||| Sbjct 12266 TCCATCGAGGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCG 12325 Query 138841 CGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGC 138900 ||||||||| ||||||| ||| || | | |||||||||| || || || ||| Sbjct 12326 CGGGCCTCGTCGCTCTCAAACGCGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGC 12385 Query 138901 ACGCCCACTCCGACAGGGCGATGGCGCAGATTTGA-CGCTTTTGCGGCTTCG---ATAGG 138956 ||||| | |||| ||||| |||||||| || |||| | || ||| || || Sbjct 12386 ACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTTCGCT----CAGCCTCGGGGATCGG 12441 Query 138957 ATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTT 139016 || ||||| | ||||||| ||||| | || ||| ||| ||||| || | | | | Sbjct 12442 GTAGTAGTTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGT-CGT 12500 Query 139017 TAATCGT-TCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGA 139075 | | | | || ||| | || ||||||||| || ||||| ||| || Sbjct 12501 ACAGCTTCTTGAAGTCGAAGGTC------TTGTCGTCGT-----TC-ACAAACTTG--GA 12546 Query 139076 CACAA--ATCGAGGCTATGTTGCACACCGCCACTTCGTCGGG-GTCGCTGTATTCGACAA 139132 || || || || | |||||||||||| || |||||||| | || |||| || | | Sbjct 12547 CAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGACG-TGTACTCAAGCA 12605 Query 139133 TTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGT 139192 ||| || | || || | |||||| || | || || || || || |||| Sbjct 12606 CCTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGT 12665 Query 139193 TACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGA 139252 | || | || ||||| ||||| ||||| ||||| || || | || | ||| | || Sbjct 12666 TGCACGAGTCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCG 12725 Query 139253 ATTTGAACAAGTCC--CTA-GCTTGTAT----TTGACGCACGTAAAGTTCGTCGCGCTCG 139305 |||| || | || || | || ||| ||| || | | ||||||||| Sbjct 12726 C---GAACCAGAGCTGCTGCGCGCGGATCGTCTTG-CGCGCGC---GGCCCTCGCGCTCG 12778 Query 139306 TACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGG-CGTCAGAAAGATCGCGACACT 139363 |||| | ||| || | ||||| |||| |||| | | ||| | ||| | | || Sbjct 12779 TACTGGTGGTACAGCGCCTCGAACTCGT-CACCCCACGTCGTGT-AGAGACCCGGCGCCT 12836 Query 139364 TGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCG 139423 || || || | || ||| ||||||| |||| |||||| ||||||||||||| | Sbjct 12837 CGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAACAGATCGG 12896 Query 139424 GAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTT-ATCTTCCGAACCCATGTTACGT 139482 | ||||||| ||| | | | ||| ||||| | | || || || || | | | Sbjct 12897 GGATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGCT--CGTTGCCGTGGTTCTT 12954 Query 139483 -TTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGC 139541 || | || ||||| || || | ||| |||||||| || ||||| || || || | | Sbjct 12955 CTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGA 13014 Query 139542 GCCTTTCCGTTT---GCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAA 139598 ||| || || || |||||| ||||| || | || | | | ||||| ||||||| Sbjct 13015 GCCCTTGCGCTTACCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAG 13074 Query 139599 CATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCG 139658 ||| ||| | || ||| ||| | ||||| |||| |||||| |||| || || Sbjct 13075 CATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAGTTGGTCGCGCG 13134 Query 139659 GACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCG 139718 || || || ||| | | ||||| |||||| | | ||||| || || |||| | || Sbjct 13135 GATGTTGTGCACACTAACACCGATGCCGCCGGCCCACTTGGAGATGCAAGCGCACT-GCT 13193 Query 139719 TAAT-GTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACG 139777 | | || || || || || || |||||||| ||| | || ||| ||||| |||| Sbjct 13194 TGAGCGTGTCATAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACG 13253 Query 139778 AAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTT 139837 | || ||||| | ||||||||| ||||| || || ||||||||||||| | Sbjct 13254 ACAGCTGCGGGCGCGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGC 13313 Query 139838 GTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATC--CCTTCCGTGGATACC 139895 || |||||| | |||||||| |||| ||| | || || ||| |||||| || Sbjct 13314 TTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCGTGCTT--GTGGATGCC 13371 Query 139896 GACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAttttttt 139955 ||| | ||| |||| | ||| || || || || || ||| ||| ||| Sbjct 13372 GACGGCGACGCGCAGAATCATCTGCTGCGGGCGCTCAGCGACCTTGCCACCGACGCGCAG 13431 Query 139956 CAGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTA 139991 || || ||||| || |||||| |||||||||| Sbjct 13432 GAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTA 13467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449824154216800