Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq208 603 1e-167 seq69 187 2e-42 >seq208 Length=29794 Score = 603 bits (668), Expect = 1e-167 Identities = 1247/1832 (68%), Gaps = 39/1832 (2%) Strand=Plus/Plus Query 147952 TGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACG 148011 ||||||| |||||||| |||||||| || ||| | ||| || ||| ||||| |||| Sbjct 11676 TGCGCAGGTAGTACATACCCGTCTTAAGACCCTTCTTCCACGCATAGAAGTGCATGGACG 11735 Query 148012 ACATGAGCGTGTACGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCAATGA 148071 || || |||||| | || | || || | ||||||||||||| ||| Sbjct 11736 TCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATGT 11795 Query 148072 ACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGCCGTCT 148131 | ||||| ||||| |||||||| || | | ||| ||| |||||||| |||||| Sbjct 11796 AGGCGCCGCGGTCGGCGGCCATATCGAGCACGGCCTTCTGCTTGATCTCCCACACCGTCT 11855 Query 148132 TGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGGT-GC 148190 ||||| | ||| | ||| || || || | | |||||| |||||| ||| | Sbjct 11856 TGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACGTTCTGCACTGAGCCGTGGTCGT 11915 Query 148191 GCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCGATC 148250 ||| | |||| ||||||| ||| ||| | | ||||||||| || || | ||| Sbjct 11916 GCAGGA-TCTGGTTGCGCACCTCGGGCGTCCAGATACCGAGCTCGATGAGCTCCTTCATC 11974 Query 148251 AGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTC 148310 || |||| ||||| | | |||||||| || |||||||| || |||| |||| || Sbjct 11975 AGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGGTC 12034 Query 148311 GTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATG 148370 || ||||| || | ||||||||||||||||| ||||||||||||| ||||| ||||| Sbjct 12035 GTGAACGGCTCGATCGACTCGTTGTTGCCCAGGATCTGCGCGGTCGACGCCGTCGGCATC 12094 Query 148371 TACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCC 148430 ||| | ||||||||||||||||| |||| | | || ||| || || ||| Sbjct 12095 GGCGCGAGCAGCAGCGAGTTGCGCACACCGTACTGCGCGACGCTGGCCTTGAGCGCGGCC 12154 Query 148431 CAGTCCCAGAG--CGG-CGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGG 148487 ||||||||||| ||| || ||| || ||| ||||||||||||||| | ||||| | Sbjct 12155 CAGTCCCAGAGGCCGGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAGATGCCCTTG 12214 Query 148488 CTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTC 148547 || |||| ||||||||| | |||||| |||||| || ||| || || || | Sbjct 12215 CTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTCGCGAGCTC-CATCGA 12273 Query 148548 G-CCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGA 148606 | |||| | ||||||| |||| | ||||||| || | | |||||||| ||| | | Sbjct 12274 GGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCT-CGCGGGCCT 12332 Query 148607 C-TCGCTTTCGTACGGCATA-CGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCC 148664 | ||||| || ||| | || | || | | |||||||| || || ||||| ||||| Sbjct 12333 CGTCGCTCTCAAACG-CGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCACGCCG 12391 Query 148665 ACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAG---CGGATAGTGG 148721 | ||| || || ||||| | |||| ||| | |||| | ||| |||| | Sbjct 12392 ATGCCGATCGGGCGGTGGCGCAGGTTGCTT---CGCTCAGCCTCGGGGATCGGGTAGTAG 12448 Query 148722 TTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAAT 148781 ||| |||||||| ||||| || |||||| || ||||| || || | |||| Sbjct 12449 TTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGTCGTACAGCTTC 12508 Query 148782 TCAAAATCGTA---CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTG 148838 | || ||| | |||||| || | | | || ||||| || || || ||| Sbjct 12509 TTGAAGTCGAAGGTCTTGTCGTCGTTCACAAACTTGGACAGCGCGATGGACGCGAGGTTG 12568 Query 148839 CACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCAT 148898 ||||| || ||| || || | ||||||| | | |||| ||| || ||||| | Sbjct 12569 CACACCGCGACCTCGTCGGGCGACGTGTACTCAAGCACCTCGCAGCAGAGGTTGCTCGAG 12628 Query 148899 TTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATG 148958 |||| ||| | ||||| || || ||||| |||||||| ||||||||| |||||| Sbjct 12629 CGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTAGAGCATG 12688 Query 148959 TACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCCTGCGCG 149015 ||||| ||| || || | ||||| || | || ||||| || | ||||||| Sbjct 12689 TACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTG---CTGCGCG 12745 Query 149016 CGCA-CTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGC 149074 || | | | ||| || ||| ||||| ||||||| |||||| ||||||| | Sbjct 12746 CGGATCGTCTTGCGCGC-GCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTC 12804 Query 149075 CTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCC 149134 || || | || |||||| || || || |||||| | || |||| |||| Sbjct 12805 GTCACCCCACGTCGTGTAGAGACCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCC 12864 Query 149135 GTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTC--G 149192 || || | ||||||||||| ||||||||||| | ||| | |||||| | ||| || | Sbjct 12865 GTTGGCCTCAACGCGCTTCATGAACAGATCGGGGATCCACATCGCGTAGAAGAGATCACG 12924 Query 149193 CGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCC 149252 ||||| ||||| ||| ||| ||| |||| ||| | ||| ||||| Sbjct 12925 CGCGCGGTGCAGC--TCGTTGCCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCG 12982 Query 149253 GCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTGCCGCC---CTGGTCG 149309 |||||||||||||| | ||||| ||||| || |||||||||||| ||||| ||| || Sbjct 12983 GCGTGCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTACCGCCACCCTGATCC 13042 Query 149310 ACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCG 149369 || | ||| || ||| ||| ||||| || | ||| || | | ||| | | | |||| Sbjct 13043 ACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCG 13102 Query 149370 TTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGC 149427 || || || ||| ||| | ||||| | | |||||||| | || ||||||| Sbjct 13103 TTCGTGCCGCGGATGTACGAGTTGGTCGCGC--GGATGTTGTGCACACTAACACCGATGC 13160 Query 149428 CGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGC 149487 ||||| | |||| |||||| ||||| | |||||| |||||||||||||| Sbjct 13161 CGCCGGCCCACTTGGAGATGCAAGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATCG 13220 Query 149488 TGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCG 149547 |||| |||||||| ||||| |||||||| ||| ||||| |||||||||| Sbjct 13221 AGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGT 13280 Query 149548 CGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGA 149607 ||||| || || | ||||| || || | | || ||| |||||||| ||||| Sbjct 13281 TGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGA 13340 Query 149608 GCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCG 149667 || || ||| ||||| | |||||||| | ||||||||||| | ||| ||||||| Sbjct 13341 GCGCGGCGTCGATGTCGTGCTTGTGGATGCCGACGGCGACGCGCAGAATCATCTGCTGCG 13400 Query 149668 GTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTAGC 149727 | ||||| || || ||| || | || | ||| || || || |||||| ||| Sbjct 13401 GGCGCTCAGCGACCTTGCCACCGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGC 13460 Query 149728 CAAAGTACTTGTAGTCAAAGTCGCGGCCGTGG 149759 ||||||| | ||| |||||||||||| ||||| Sbjct 13461 CAAAGTAGTCGTACTCAAAGTCGCGGTCGTGG 13492 >seq69 Length=49210 Score = 187 bits (206), Expect = 2e-42 Identities = 513/769 (67%), Gaps = 19/769 (2%) Strand=Plus/Plus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||||||||| ||||| ||||| || ||||| || ||||||| | ||| || ||| ||| Sbjct 8200 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 8259 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACG-AGCAGTC 120472 | ||||||||||| | | || || || | ||| |||| | | || || | Sbjct 8260 CCAGTCGAACGGGTTCGACACCTTGTAG-ATCTTGGCAACACCAAGCGCGTGGAGGAGGC 8318 Query 120473 GGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCA 120532 | || || ||||||||||||| ||||||| || |||||| || | | | ||| Sbjct 8319 GATCGGCGCAGAACTCAATGTACTGGCACATGAGGGACGAGTTCATACCGATGAGCTCCA 8378 Query 120533 CCGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGGCGA 120592 |||| | || | || |||||||||||| || | || || || | || || Sbjct 8379 CCGGGAGCGAGTCCTGGACAAACTCCTTCTCGATCGCAACGGCATCGCGAATGATCTCGT 8438 Query 120593 GCATAGTGTGGC-CGGGCATCTTGTGTTCGATGCGCGTTCG-GTAGTACAGGCACGCAAA 120650 | || | | | | | || | ||||| ||| || |||| ||| ||||||||| || Sbjct 8439 GGAT-GCGAGACTCAGGGAGCTTGTTGGCGA---GC-TTCGAGTACAGCAGGCACGCGAA 8493 Query 120651 GTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCAT 120710 ||| ||| || |||||||| ||||| ||||||||||| || | ||||| ||||| Sbjct 8494 GTCGCAGTGGAGACCCTCGTCACGCGAGATCAGCTCGTTCGAGAAGCTGAGGCCAGGCAT 8553 Query 120711 GATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTC 120770 || ||| | |||||| |||| || | | || |||||| ||||| | |||||| Sbjct 8554 GAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCTC 8613 Query 120771 CACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGC-CGTCTTGCTGTCGATCCACT 120829 || || || ||||| || |||||||| |||| || || | | |||| ||||| Sbjct 8614 AACAGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGCGCG-AGTCGCACCACT 8672 Query 120830 TCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAGCA 120889 | | ||||| | ||||| || ||||||| || ||| ||||| ||| || || Sbjct 8673 TAAGCGCCCAGTGCGCCTTCTTCTGCACGCAGGGGATCGTCTCGATGGCGCGGAGAAGGT 8732 Query 120890 TGTCGCGCTCGCCCTCCTCCGCAATCAGCTGATGGATGAGCAGATTGTACATTTCCGTGT 120949 || |||| || ||| || | | ||||||||| ||||| |||| || Sbjct 8733 GGTTCTTCTCGGTCTGGTCCTTGATGTACGTGTCGATGAGCAGCGAGTACACCTCCGAGT 8792 Query 120950 GCACGCACTCGATCAGCACTTGCTGGTTG---TAAAAGTACTGCGCCTCCAGCTCGGGCA 121006 | | | ||| ||| ||| | |||| | || ||| | ||||||| | | ||| Sbjct 8793 GGATGTTCTCAATC-GCAAT--CTGGAAGCCATAGAAGCAACGCGCCTCAGGAACCTGCA 8849 Query 121007 CCGC-CCGCTGCATGTACTCGATAAGGTTAATATTCACGATACTGTCGGCGGCGGCGAAG 121065 || | | |||| | | ||| ||||| || ||||| | || ||| |||||| Sbjct 8850 CCTCGCTGCTGAAGTTCATCG-CGAGGTTCTCGTTGACGATGCCATCACTGGCCGCGAAG 8908 Query 121066 AACGCCAGCACGTGCTTGATAAAGTGTCGCTCGTCGTCCGTGAGCTTGT 121114 ||||| |||||||||||||| |||| ||||||| ||||||||| |||| Sbjct 8909 AACGCGAGCACGTGCTTGATGAAGTAGCGCTCGTTGTCCGTGAGGTTGT 8957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483341881554400