Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq208 284 1e-71 >seq208 Length=29794 Score = 284 bits (314), Expect = 1e-71 Identities = 1197/1843 (65%), Gaps = 59/1843 (3%) Strand=Plus/Plus Query 146585 TGCGCAAATAATACATGCCCGTTTTGAGGCCACATCG-CCACGAGTGATTGTGAATCGAA 146643 |||||| || ||||| ||||| || || || | || ||||| | ||| || || Sbjct 11676 TGCGCAGGTAGTACATACCCGTCTTAAGACC-CTTCTTCCACGCATAGAAGTGCATGGAC 11734 Query 146644 GTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGGCTTTGATCTATG 146703 |||| || | |||||||||||| | | | || | ||| ||||| || ||| Sbjct 11735 GTCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATG 11794 Query 146704 AAAGCGTTGCGGTCGGCCGCCATCTCAATCATG-CGTTTTGTCTTCATTTCCCAAGCGGT 146762 | ||| ||||||||| ||||| || | || | | || || ||| || ||||| | || Sbjct 11795 TAGGCGCCGCGGTCGGCGGCCATATCGAGCACGGCCTTCTG-CTTGATCTCCCACACCGT 11853 Query 146763 TTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAATAGAGCCCTTGT- 146821 |||||| | |||| ||| ||| || || | | ||| || | ||||| | || Sbjct 11854 CTTGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACGTTCTGCACTGAGCCGTGGTC 11913 Query 146822 GCGCAAAAATAGTGTTTCGTATTTCGGGCGTGTAAAGGTTTAGTTTAATGAGGTCATCAA 146881 | ||| | | ||| || | |||||||| | | || | ||||| || | | Sbjct 11914 GTGCAGGATCTG-GTTGCGCACCTCGGGCGTCCAGATACCGAGCTCGATGAGCTCCTTCA 11972 Query 146882 TTAAATACTGATTGACCA-CTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTG 146940 | | |||| || || | | |||| |||||| || ||||| || | | |||| ||| Sbjct 11973 TCAGGTACTTGTTCACGATCGTGAA-CTCGCCTGCAAGCACGCGGCGGTTGTACATGTTG 12031 Query 146941 CTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGC 147000 | ||||| ||||| | ||||| || ||||| | || || || || | || || ||| Sbjct 12032 GTCGTGAACGGCTCGATCGACTCGTTGTTGCCCAGGATCTGCGCGGTCGACGCCGTCGGC 12091 Query 147001 ATGTACGCCACCAACAATGAATTTCGCAGACCGTAC-GCACGGATGTTGTCCTTCAAAGT 147059 || ||| | || || || || |||| ||||||| || || | | || |||| | | Sbjct 12092 ATCGGCGCGAGCAGCAGCGAGTTGCGCACACCGTACTGCGCG-ACGCTGGCCTTGAGCGC 12150 Query 147060 TTGCCAGTCCCACATC---GACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCC 147116 ||||||||| | |||| ||||| ||| ||||||||||||||||| | || Sbjct 12151 GGCCCAGTCCCAGAGGCCGGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAGATGCC 12210 Query 147117 TCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACA 147176 || |||| ||| || | | | ||| |||| || ||| | || || Sbjct 12211 CTTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTCGCGAGCTC-CA 12269 Query 147177 GCTTG-CCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCG 147235 | | |||| | ||| || |||| | || ||| ||| | ||||| || || | Sbjct 12270 TCGAGGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGG 12329 Query 147236 CTTCTTCGCTCTCGTAAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATA 147294 | || |||||||| || || || | || || | || || || || | |||||| | Sbjct 12330 CCTCGTCGCTCTCA-AACGCGTAGCCCATGAGGATGAACGCGTCCGCGAGACCCTGCACG 12388 Query 147295 CCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT-ATGGGATAGTG 147353 |||| |||||| || || || |||||| |||| || |||| || || |||| Sbjct 12389 CCGATGCCGATCGGGCGGTGGCGCAGGTTGCTTCGCTCAGC-CTCGGGGATCGGGTAGTA 12447 Query 147354 GTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTT 147413 |||| || || | |||||||||||| ||| || || || || || | || || Sbjct 12448 GTTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGTCGTACAGCTT 12507 Query 147414 CTCGAAATCATAAGTCCCGTCTTCGA-CACGTACGCATTGGTTCACGGCGATAGACGCCA 147472 || ||| || | ||| ||| ||| ||| || |||| || ||||| ||||| | Sbjct 12508 CTTGAAGTCGAAGGTCTTGTCGTCGTTCACAAAC---TTGGA-CAGCGCGATGGACGCGA 12563 Query 147473 GATTGCAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATTTCGGCGCACAGGTTG 147531 | ||||| || || ||| |||| || || |||||| | | ||| ||| |||||| Sbjct 12564 GGTTGCACACCGCGACCTCGTCGGGCGACG-TGTACTCAAGCACCTCGCAGCAGAGGTTG 12622 Query 147532 CTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAG 147591 || | || || | || ||||| || || || ||||||| ||| ||| || Sbjct 12623 CTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTAG 12682 Query 147592 AGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCC 147648 ||||||||||| ||| ||||||| |||| || | ||| |||| || | | Sbjct 12683 AGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACC---AGAGCTGC 12739 Query 147649 TGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCA 147708 ||||| || | | || || |||||||||| |||||| | | ||||| | ||| Sbjct 12740 TGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCG 12799 Query 147709 AACTCGTCGCCGTAGCAATCG-GCA-AGGCCGGGACACTGATGCGGACACATCAGCGACC 147766 |||||||| || | ||| | | || || || || | ||| || | ||| || Sbjct 12800 AACTCGTCACCCCA--CGTCGTGTAGAGACCCGGCGCCTCGTTCGGGCAGAACAGGCTCC 12857 Query 147767 ACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAA 147826 || | ||| || | |||||| ||| |||||||| || | ||||| |||||| | | Sbjct 12858 ACTCGCCGTTGGCCTCAACGCGCTTCATGAACAGATCGGGGATCCACATCGCGTAGAAGA 12917 Query 147827 GAT--CGCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAAT-TAAGCACGCTAT 147883 ||| ||||||| |||| |||| ||| ||| || | | | | || | | Sbjct 12918 GATCACGCGCGCGGTGCA--GCTCGTTGCCGTGGTTCTTCTTGAGGTCGAGGAACTCGA- 12974 Query 147884 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTTCCG---C 147940 |||||||||||||||| || || | ||| | || | || || || ||||| ||| | Sbjct 12975 AGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTACCGCCAC 13034 Query 147941 CCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCG 148000 |||| || |||| ||| || ||| ||| |||||||||| |||||| | |||||| ||| Sbjct 13035 CCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCG 13094 Query 148001 CAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGC 148060 | |||||| ||| ||| | | | || || | | |||||| |||| | Sbjct 13095 ACGAGCCGTTCGTGCCGCGGATGTACGAGTTGGTCGCGCGGATGTTGTGCACACTAACAC 13154 Query 148061 CAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAA---TGTCGTGTAGATGC 148117 | ||||||||| | |||| || ||| |||||| | || | |||| ||||||| Sbjct 13155 CGATGCCGCCGGCCCACTTGGAGATGCAAGCGCACT-GCTTGAGCGTGTC--ATAGATGC 13211 Query 148118 CGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCG 148177 | ||||| ||||| || | | | |||| || ||||| ||| ||||| | ||| Sbjct 13212 CCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCG 13271 Query 148178 TTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCAT-CATGCGA 148236 | || || ||| || || || |||||||||| || || |||| ||| | || Sbjct 13272 TGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCG- 13330 Query 148237 TACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGC 148296 |||||||| | ||| | |||||||||| ||| ||||| | |||||||||| | | Sbjct 13331 TACGTCTCGAGCGCGGCGTCGATGTCGTGCTTGTGGATGCCGACGGCGACGCGCAGAATC 13390 Query 148297 ATGTGCTGTGGTCGTTCGGC-AACTTG--ATTGTTGATCTTGAGAAGATATCCATTTTCG 148353 || ||||| || || || || | |||| | | | | || || || || ||| Sbjct 13391 ATCTGCTGCGGGCGCTCAGCGACCTTGCCACCGACGCGC---AGGAGGTACGACTTCTCG 13447 Query 148354 AGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGT 148396 || || ||| | |||||||| | ||| ||||| || | |||| Sbjct 13448 AGCGTCTTGAAGCCAAAGTAGTCGTACTCAAAGTCGCGGTCGT 13490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476533393221600