Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq208 138 1e-27 seq562 86.0 6e-12 >seq208 Length=29794 Score = 138 bits (152), Expect = 1e-27 Identities = 911/1434 (64%), Gaps = 65/1434 (5%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || || ||| | ||||||| || || ||||| ||| | ||||| |||||||| | Sbjct 13398 CAGCAGATGATTCTGCGCGTCGCCGTCGGCATCCACAAGCACGACATCGACGCCGCGCTC 13339 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTT----ACGCACGCTTCGCCCACCATGTT 7679 || |||||| | ||||| | || || || |||||||| |||| || |||| Sbjct 13338 GAGACGTACGAGTACATGTC---GCAA-AGCTTCTTCACGCACGCGACGCCGACGCTGTT 13283 Query 7680 TGCCGCGGGCACAAACGCGCCT-CAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAG 7738 ||| ||||| |||||| || |||| ||||| || |||| ||||| || | Sbjct 13282 CAACGCCGGCACGC-CGCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCGCCATGAAGGACG 13224 Query 7739 ACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCG 7798 || ||||| ||||| || ||||||| | ||||| || ||||| | | || Sbjct 13223 ACTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCTTGCATCTCCAAGTGGGCCG 13164 Query 7799 GCGGAATAGGTCTGAACGTAAACGACGTGCGCGC---CAACG-GTAGCCGCATCGTGTCC 7854 |||| || ||| | | || || || | ||||| |||| ||| |||| | Sbjct 13163 GCGGCATCGGTGTTAGTGTGCACAACATCCGCGCGACCAACTCGTA----CATCCGCGGC 13108 Query 7855 ACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGA 7914 || ||||| | | ||| | | ||||||| ||||||||||||| || ||| ||| Sbjct 13107 ACGAACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTTCAACGACACGGCGCGT 13048 Query 7915 CATGTAGACCAG---GGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGG 7971 |||| || ||| || || |||||||| ||| | || || || ||||||||||| Sbjct 13047 TATGTGGATCAGGGTGGCGGTAAGCGCAAGGGCTCGTTCGCGATGTACCTGGAGCCGTGG 12988 Query 7972 CACGCGGACATTTACGCAGTGCTAAATCT-GCGTCGCAACATGGGTTGCGAAGA-CAGCA 8029 ||||| ||||| | || | || | || | | | || | || | || | ||| Sbjct 12987 CACGCCGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACG----GCAACGAGCTGCA 12932 Query 8030 AAGCGCGC--GATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCA 8087 |||||| ||||| |||| || ||||| | ||||||||||| |||| ||||||| | Sbjct 12931 CCGCGCGCGTGATCTCTTCTACGCGATGTGGATCCCCGATCTGTTCATGAAGCGCGTTGA 12872 Query 8088 TTTCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCCC---TTTATTAAAAAACGT 8144 | ||| | ||| || | || ||||| || || | | || | ||| Sbjct 12871 GGCCAACGGCGAGTGGAGCCTGTTCTG-CCCGAACGAGGCGCCGGGTCTCTACACGACG- 12814 Query 8145 TTACGGTTCAAAATTTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCG 8204 | ||| | || || ||||| | || ||||| | ||| ||| || || || Sbjct 12813 -TGGGGTGACGAGTTCGAGGCGCTGTACCACCAGTACGAGCGCGAGGGC-CG--CGCGC- 12759 Query 8205 GCAAGTGAAAGCGCGCG-ACCTGCACCG---CGCCATTATCGAATGTCAAAACGAAACCG 8260 ||||| | |||||| | | || | | ||| || |||| | || | ||| || | Sbjct 12758 GCAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCGATCCTCGAGTCGCAGATCGAGACGG 12699 Query 8261 GTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGG 8320 | | |||||||||||| ||||| ||| | |||||| ||| || || ||| | | Sbjct 12698 GCACGCCGTACATGCTCTACAAGGACTCGTGCAACCGCAAGTCGAACCAGCAGAACCTCG 12639 Query 8321 GCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAG 8380 |||| || | | ||||| || ||| || | | |||||| |||||||||| | Sbjct 12638 GCACGATCCGCTCGAGCAACCTCTGCTGCGAGGTGCTTGAGTACACGTCGCCCGACGAGG 12579 Query 8381 TGGCCGTTTGCAATCTAGCG----TCGGTGTGTTTAAACGCGTTCGTTGATCGACGCTCA 8436 | || || ||||| || ||| ||| ||| || ||| | ||| ||||| Sbjct 12578 TCGCGGTGTGCAACCTCGCGTCCATCGCGCTGTCCAA----GTTTG-TGAACGACG--AC 12526 Query 8437 AACACTTACGACTTTGAACAATTGAAAAACGCCGTGCAAGTGACGGTA--CGCAATTTAG 8494 || || | |||||| | | || | || | |||| | || | ||||| | Sbjct 12525 AAGACCTTCGACTTCAAGAAGCTGTACGACATC-ACCAAG-GTCGTCACGCGCAACCTCA 12468 Query 8495 ATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGC-GCGCGTATCGAACATGCGC 8553 | |||| || |||| | || || | || || | ||| | | ||| ||||| Sbjct 12467 ACAAGGTCATCGACATCAACTACTACCCGATCCCCGAGGCTGAGCGAAGC-AACCTGCGC 12409 Query 8554 CACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTC 8613 ||| | || | ||| | |||||||| ||||| || |||||||| | | || || | Sbjct 12408 CACCGCCCGATCGGCATCGGCGTGCAGGGTCTCGCGGACGCGTTCATCCTCATGGGCTAC 12349 Query 8614 CCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTAC 8673 | | || ||| | || || ||| |||||||| || || || ||| |||| | | Sbjct 12348 GCGTTTGAGAGCGACGAGGCCCGCGAGCTCAACAAGAACATCTTCGAGACGCTGTACTTC 12289 Query 8674 GGCGCATTAGAAGCC-AGCTGTCAACTTGCCCGAGAATTGGGCACGTACGAATCGTACGC 8732 ||||| | || ||| | || | || || || ||| |||||| |||| Sbjct 12288 GGCGCGATGGAGGCCTCGATG-GAGCTCGCGAAGGAGCACGGCCCGTACGCCAGCTACGA 12230 Query 8733 GGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGTCACGCCCACCTC 8792 |||| || | ||| || || || || |||||||||||| |||||||| || || Sbjct 12229 GGGCTCACCCGTGAGCAAGGGCATCTTCCAGTACGACATGTGGGGCGTCACGCCGACGTC 12170 Query 8793 ---TTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTC 8849 | ||| | ||| || | || || | || || | |||| ||||||| || Sbjct 12169 CGGCCTCTGGGACTGGGCCGCGCTCAAGGCCAGCGTCGCGCAGTACGGTGTGCGCAACTC 12110 Query 8850 GCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATC 8909 |||| || | || ||||| || || |||| || || || |||| |||||||| || Sbjct 12109 GCTGCTGCTCGCGCCGATGCCGACGGCGTCGACCGCGCAGATCCTGGGCAACAACGAGTC 12050 Query 8910 CTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTT 8963 | ||||||||||| | |||| ||||| | || ||| | || ||||| || Sbjct 12049 GATCGAGCCGTTCACGACCAACATGTACAACCGCCGCGTGCTTGCAGGCGAGTT 11996 >seq562 Length=14249 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||||||||| ||||| || ||||| || ||||||||||| || ||| | Sbjct 13920 AGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGG 13979 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| |||||||| ||||| || || |||| ||||||||||| || || || ||| Sbjct 13980 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCT 14036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505315893711200