Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq208 230 3e-55 seq69 131 2e-25 seq51 89.7 6e-13 >seq208 Length=29794 Score = 230 bits (254), Expect = 3e-55 Identities = 576/861 (67%), Gaps = 17/861 (2%) Strand=Plus/Plus Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376 ||||| || | |||| ||||| ||| |||||||| ||||||||||||||||| Sbjct 12632 ATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTAGAGCATGTAC 12691 Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCG-GCTGGTA 111434 ||||| |||||||| |||| || | ||| || || ||| | | | ||| || | | Sbjct 12692 GGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGATC 12751 Query 111435 CAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCAC 111494 | ||| || || ||||| |||||||| ||| || || || ||||| |||| Sbjct 12752 GTCTTGCGC--GCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCAC 12809 Query 111495 CCACCG-CGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCT 111553 || || ||| | ||||||| || |||| || || ||||| || ||| | || Sbjct 12810 CCCACGTCGT-GTAGAGACCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTG 12868 Query 111554 TCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-CA 111612 ||||||| ||||||||||| || || || ||||||| | | |||||||| | | Sbjct 12869 GCCTCAACGCGCTTCATGAACAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCG 12928 Query 111613 CCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATATCCGCGT 111671 | | || || ||| || ||||| || | | || |||||||| | ||| || |||| Sbjct 12929 CGGTGCAGCT-CGTTGCCGTGGTTCT-TCTTGAGGTCGAGGAACTCGAAGATGTCGGCGT 12986 Query 111672 GCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACAT 111728 |||| ||||| || || | |||| || ||||| || || ||| | |||| |||| Sbjct 12987 GCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGCTTACCGCCACCCTGATCCACAT 13046 Query 111729 AGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTG 111788 | ||||| ||| |||| || ||||| ||||| || | | || | || || || | Sbjct 13047 AACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCG 13106 Query 111789 TCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCCC 111846 | || || || ||||| || | || | | | || | | || || || || Sbjct 13107 TGCCGCGGATGTACGAG--TTGGTCGCGCGGATGTTGTGCACACTAACACCGATGCCGCC 13164 Query 111847 AGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTC 111906 |||||||| ||||| || |||| | | || || ||||||| || | ||| ||||| Sbjct 13165 GGCCCACTTGGAGATGCAAGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGTC 13224 Query 111907 CTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAA 111966 ||||| |||||| |||||||| |||| |||||| | || || || || ||||| Sbjct 13225 GTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAA 13284 Query 111967 GAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGAC 112026 || || || || ||||| |||| | | ||| ||||| | ||||| ||||| | | Sbjct 13285 CAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGC 13344 Query 112027 AGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGGT 112086 | || ||||| | | ||||||||||| ||||| |||| | ||| | ||| ||| Sbjct 13345 GGCGTCGATGTCGTGCTTGTGGATGCCGACGGCGACGCGCAGAATCATCTGCTGCGGGCG 13404 Query 112087 TTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAAA 112146 || || ||||| ||| || | || || |||||| || || |||| ||||| Sbjct 13405 CTCAGCGACCTTGCCACCGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAA 13464 Query 112147 GTAACCAAAATCATAGTCCCG 112167 ||| | | ||| |||| || Sbjct 13465 GTAGTCGTACTCAAAGTCGCG 13485 >seq69 Length=49210 Score = 131 bits (144), Expect = 2e-25 Identities = 338/503 (67%), Gaps = 14/503 (3%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || || |||||||| |||||||||||||| || | || || | ||||| Sbjct 8201 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 8260 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTGGCACC-CCAACTTGTTTGAGGAGACG 122489 |||| || || ||| | | || | || ||||| | |||| | |||||| || Sbjct 8261 CAGTCGAACGGGTTCGACACCTTGTAGATCT-TGGCAACACCAAGCGCGTGGAGGAGGCG 8319 Query 122490 ATCCGA-CACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 ||| | || | |||||||||||| | |||| ||||||||||||||||| | Sbjct 8320 ATCGGCGCAGA-ACTCAATGTACTGGCACATGAGGGACGAGTTCATACCGATGAGCTCCA 8378 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 ||||| | |||| || ||| | ||||| ||| |||| || || | ||| ||| Sbjct 8379 CCGGGAGCGAGTCCTGGACAAACTCCTTCTCGATCGCAACGGCATCGCGAATGATCTCGT 8438 Query 122609 GGAT---AGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTC-CACGGCAAAC 122664 |||| || || || | | | || | || | | ||| |||| | || Sbjct 8439 GGATGCGAGACTC---AGGGAGCTTGTTGGCGAGCTTCGAGTACAGCAGGCACG-CGAAG 8494 Query 122665 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATG 122724 || |||||||||||| || || || || || || || ||||||| || || |||||| Sbjct 8495 TCGCAGTGGAGACCCTCGTCACGCGAGATCAGCTCGTTCGAGAAGCTGAGGCCAGGCATG 8554 Query 122725 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 || || |||||||| | ||| | |||| |||||| || || ||||||||||| ||||| Sbjct 8555 AGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCA 8614 Query 122785 ACACACGCAAACGCAAAAAGGCGTTCGGCGAA-GGAGCGAGACTTTGCATCAAACCATTT 122843 ||| || ||||| | | || |||||||| | ||| | | | || |||| || Sbjct 8615 ACAGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGC-GCGAGTCGCACCACTT 8673 Query 122844 CATTGCCCATTTCGCCTTCTTCT 122866 | ||||| | ||||||||||| Sbjct 8674 AAGCGCCCAGTGCGCCTTCTTCT 8696 >seq51 Length=53042 Score = 89.7 bits (98), Expect = 6e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 182709 GGGAACACACCGTAGTGATCACGACCAACGACAGAGAGACCCGCAACCGCGAGGGTTTTC 182768 |||||||||||||||| ||| || ||||| |||||||| || | |||| |||||| Sbjct 41604 GGGAACACACCGTAGTAATCGCGTCCAACAACAGAGAGGCCACTGATTGCGAAGGTTTTG 41663 Query 182769 GCCGAATCACCCTCCGTGACAATGAGAGTACACTTTCCAGATTGTGCCGTACCCGCCTTG 182828 || || || ||||| || | ||| || || || ||| || | |||||||| || | | Sbjct 41664 GCTGACTCGCCCTCAGTCAGAATCAGCGTGCAGTTTTGAGCCTTCGCCGTACCGGCGTAG 41723 Query 182829 TTCGCGTCATCCAACTTGGGAATACCGGT 182857 ||||| || || | ||| || || || || Sbjct 41724 TTCGCATCGTCAAGCTTTGGGATTCCTGT 41752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627929473776000