Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq208 264 1e-65 seq69 187 3e-42 seq51 98.7 1e-15 >seq208 Length=29794 Score = 264 bits (292), Expect = 1e-65 Identities = 1186/1848 (64%), Gaps = 77/1848 (4%) Strand=Plus/Plus Query 117820 TCGCCTTGGCCTTTGATCGG------AGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCC 117873 |||| | |||||| | |||| ||||||||||| |||||||| || |||| ||||| Sbjct 11655 TCGCATCGGCCTTCGGTCGGCTGCGCAGGTAGTACATACCCGTCTTAAGACCCTTCTTCC 11714 Query 117874 AGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGAAGAGGTTCA 117933 | ||||| | ||||| || | || |||| || || || | ||| | ||| | Sbjct 11715 ACGCATAGAAGTGCATGGACGTCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGA 11774 Query 117934 TACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCA 117993 ||| || |||| || || || || || |||||||| | ||| ||||| Sbjct 11775 GCGACTGGCTCTGGCAGATGTAGGCGCCGCGGTCGGCGGCCATATCGAGCACGGCCTTCT 11834 Query 117994 TCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATC---CACGA 118050 |||||| |||||||| ||| |||| | ||| | |||| ||||| | |||| Sbjct 11835 GCTTGATCTCCCACACCGTCTTGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACG- 11893 Query 118051 TATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTT---CATATCCTTTGACCAGA 118107 || || | || || | | || || || | || || || | ||||| Sbjct 11894 --TTCTGCACTGAGCCGTG-GTCGTG--CAGGATCTGGTTGCGCACCTCGGGCGTCCAGA 11948 Query 118108 GACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGA 118167 ||| | || |||| |||| || || | ||| || || | ||||| || || | Sbjct 11949 TACCGAGCTCGATGAGCTCCTTCATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAA 12008 Query 118168 GGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGA 118227 | ||| | || || ||||||||| | ||||| | |||| ||||| |||| || Sbjct 12009 GCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCCAGGA 12068 Query 118228 TTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTT 118287 | || || || || || || ||||| || || | || || ||| || | ||| | | Sbjct 12069 TCTGCGCGGTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACACCGTACT 12128 Query 118288 CCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTC-TCCCCCTG---- 118342 | | || ||||||| ||| ||||||| || || | | || | || Sbjct 12129 GCGCGACGCTGGCCTTGAGCGCGGCCCAGTCCCAG---AGGCCGGACGTCGGCGTGACGC 12185 Query 118343 -CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 118401 |||||| || |||||| ||| || | | | | || || ||||| | | | || | Sbjct 12186 CCCACATGTCGTACTGGAAGATGCCCTTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACG 12245 Query 118402 GGCCCTCAACCTCCGCCAATTCG---GAGCTCGCCTCGAGGGCTGCGTGATACATTGTTT 118458 |||| | ||| ||| | || ||| ||||| | || || |||| || | Sbjct 12246 GGCCGTGCTCCTTCGCGAGCTCCATCGAG---GCCTCCATCGCGCCGAAGTACAGCGTCT 12302 Query 118459 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA 118517 | || ||| || | | |||||||||| ||||||||| || | || | Sbjct 12303 CGAAGATGTTCTTGTTGAGCTCGCGGGCCTCGTCGCTCTCAAACGCGTAGCC--CATGAG 12360 Query 118518 -ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 118576 || || | ||||||||||| || || |||| ||| || ||||| || | || || Sbjct 12361 GATGAACGCGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTG-- 12418 Query 118577 CTTCCGAGCGGTCTCCACG---GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 118633 |||| | | | ||| | || || | || | ||||| ||| | || || || Sbjct 12419 CTTC-GCTCAGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTGAGGTTGCG 12477 Query 118634 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT 118693 ||||| ||||| ||||| || | ||||| | | | || || | | || || || Sbjct 12478 CGTGACGACCTTGGTGATGTCGTACAGCTTCTTGAAGTCGAAGGTCT---TGTCGTCGTT 12534 Query 118694 GACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 118753 ||| |||| | || ||||| ||||| || || ||||| | | ||| || || Sbjct 12535 CACAAACTTGGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGACGT 12594 Query 118754 GTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTA---ATGGTGCCCAAGTTCTTTTG 118810 |||||| | | || ||| | ||| ||| || ||||| | ||||| || Sbjct 12595 GTACTCAAGCACCTCGCAGCAGAGGTTG---CTCGAGCGGATCGTGCCGAGGTTCTGCTG 12651 Query 118811 ATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTG 118870 || ||||| ||| |||| |||||||| |||||||| ||||| |||||||| | || Sbjct 12652 GTTCGACTTGCGGTTGCACGAGTCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGATCTG 12711 Query 118871 GGACTTGAGAATAGCCTTCCAGACATCGGCAGCTG-GCACAG-TGGCGTTG---GCTCGC 118925 |||| ||| || || ||||| || |||| || | | | | ||| || || Sbjct 12712 CGACTCGAGGATCGCGAACCAGA-----GCTGCTGCGCGCGGATCGTCTTGCGCGCGCGG 12766 Query 118926 CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCC-ACGGCCTCTGAGAG 118984 ||||| |||||||| ||| || || || ||||| |||||| ||| | | | |||| Sbjct 12767 CCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCACCCCACGTCGTGT-AGAG 12825 Query 118985 CCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 119044 || || |||| | |||||||| || ||| | || ||||||| |||||||| Sbjct 12826 ACCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCAT 12885 Query 119045 GAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCC 119103 ||| || || |||||||| | ||| |||||||||| || ||| || || | | | Sbjct 12886 GAACAGATCGGGGATCCACATCGCGTAGAAGAGATCACGCGCGCGGTGCAGCT-CGTTGC 12944 Query 119104 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 119163 | || || | || | || || | ||| || ||||||||||| |||||||||| Sbjct 12945 CGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCCAGGTACA 13004 Query 119164 CCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAA 119220 ||||| || ||||| || || ||| |||| | ||||| | ||| ||| |||| | Sbjct 13005 TCGCGAACGAGCCCTTGCGCTTACCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGA 13064 Query 119221 ATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAAT--ACGAGA 119278 | || || ||||| || | || || | || ||| || || || || || ||||| Sbjct 13065 ACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAG- 13123 Query 119279 CTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 119338 || | || | || | ||| | | ||| || || || |||||||| ||||| Sbjct 13124 -TTGGTCGCGCGGATGTTGTGCACACTAACACCGATGCCGCCGGCCCACTTGGAGATGCA 13182 Query 119339 CGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAG 119398 ||||||| | |||| || | ||||| || ||||||||||| |||| | |||| || Sbjct 13183 AGCGCACTGCTTGAGCGTGTCATAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAG 13242 Query 119399 GAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTG 119458 |||||| ||||| || || | || || || |||||||| || || || |||||||| Sbjct 13243 GAAGCACGACGACAGCTGCGGGCGCGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTG 13302 Query 119459 GATGAACATACCTTGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCC 119518 |||| | | ||| ||||| | ||||| ||||| | ||||| ||||| | | Sbjct 13303 CGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCGTGCTT 13362 Query 119519 GTGAATACCGATCGAGACCCGCATAAACATGTATTG-GGGTGTTTCCATC-AGGATACCA 119576 ||| || |||| | ||| |||| || ||| | || ||| | | || | | | ||| Sbjct 13363 GTGGATGCCGACGGCGACGCGCAGAATCATCTGCTGCGGGCGCT--CAGCGACCTTGCCA 13420 Query 119577 TCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAG 119624 ||| | | ||||||| |||||| | ||||||| ||||| ||| Sbjct 13421 CCGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTAG 13468 >seq69 Length=49210 Score = 187 bits (206), Expect = 3e-42 Identities = 398/584 (68%), Gaps = 24/584 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | | ||| | ||||| Sbjct 8201 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 8260 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCA-CTCCAATCTGTTTGAGGAGACG 129846 | || || |||||| || | || ||||| | |||| | | |||||| || Sbjct 8261 CAGTCGAACGGGTTCGACACCTTGTAGATCT-TGGCAACACCAAGCGCGTGGAGGAGGCG 8319 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | | | |||||||||||| |||| ||||||||||||||||| | Sbjct 8320 ATCGGCGCAGAACTCAATGTACTGGCACATGAGGGACGAGTTCATACCGATGAGCTCCAC 8379 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||||| |||| || ||| ||||||| || | || || || || | ||| |||| Sbjct 8380 CGGGAGCGAGTCCTGGACAAACTCCTTCTCGATCGCAACGGCATCGCGAATGATCTCGTG 8439 Query 129967 AATG---GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-GGCA---- 130018 ||| | ||| | | || | | ||| || ||| |||| | | |||| Sbjct 8440 GATGCGAGACTCAGGG--AGCTTGTTGGCG---AG-CTTC--GAGTACAGCAGGCACGCG 8491 Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || || |||||||||||||||||| ||||| || || |||||||||| || || ||| Sbjct 8492 AAGTCGCAGTGGAGACCCTCGTCACGCGAGATCAGCTCGTTCGAGAAGCTGAGGCCAGGC 8551 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 130138 ||||| || |||||||| | |||||| || | || || ||||| ||||||||||| ||| Sbjct 8552 ATGAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCC 8611 Query 130139 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAA---GGAGCGGGACTTTGTATCAAAC 130195 || ||| |||||||| | || |||||| || || || |||| | | || || Sbjct 8612 TCAACAGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGCGC---GAGTCGCAC 8668 Query 130196 CACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAG 130255 ||||| | |||||| |||||||| |||| | || |||| |||| ||| || | Sbjct 8669 CACTTAAGCGCCCAGTGCGCCTTCTTCTGCACGCAGGGGATCGTCTCGATGGCGCGGAGA 8728 Query 130256 AGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299 || | ||||| || | | || ||||||||| | || ||||| Sbjct 8729 AGGTGGTTCTTCTCGGTCTGGTCCTTGATGTACGTGTCGATGAG 8772 >seq51 Length=53042 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 179968 GGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTC 180027 |||||||||||||||| ||| || ||||| |||||||| ||| | ||||| ||| || Sbjct 41604 GGGAACACACCGTAGTAATCGCGTCCAACAACAGAGAGGCCACTGATTGCGAAGGTTTTG 41663 Query 180028 GCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCTGCCTTG 180087 || || || ||||| |||| || ||||| || ||| || | ||||| || || | | Sbjct 41664 GCTGACTCGCCCTCAGTCAGAATCAGCGTGCAGTTTTGAGCCTTCGCCGTACCGGCGTAG 41723 Query 180088 TTCGCGTCGTCCAACTTGGGAATACCAGT 180116 ||||| ||||| | ||| || || || || Sbjct 41724 TTCGCATCGTCAAGCTTTGGGATTCCTGT 41752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618334240453600