Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3006 172 2e-37 seq9 156 1e-32 >seq3006 Length=2233 Score = 172 bits (190), Expect = 2e-37 Identities = 761/1195 (64%), Gaps = 16/1195 (1%) Strand=Plus/Minus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || || ||| | || || || || || ||||| | ||| ||||| || || || || || Sbjct 1205 GGCATTGATCTCGGCACGACGTACTCGTGTGTCGGTGTGTGGCAGAACGACCGAGTGGAG 1146 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || || || || || ||| | || ||||| || ||||| || || || || || Sbjct 1145 ATCATCGCGAACGACCAGGGCAACCGCACGACGCCGTCGTACGTGGCGTTCACGGACACG 1086 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| |||| || || |||| || || || | || || | | |||||||| Sbjct 1085 GAGCGTCTGATCGGCGACGCTGCGAAGAACCAGGTCGCGATGAACGCCAGCAATACGGTC 1026 Query 349385 TTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTA 349444 || || || ||||| || || || | | || || ||| | || || || | Sbjct 1025 TTCGACGCCAAGCGCCTGATCGGACGCAAGTTCTCGGACGCAGTCGTGCAGTCGGACATG 966 Query 349445 AAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAA 349504 || || | || || | || || | || ||||| || || | || || Sbjct 965 AAGCACTGGCCGTTCAAGGTGGTCGCCGGGTCGGGAGATAAGCCGCAGATCGTCGTCGAG 906 Query 349505 TATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAA 349564 | || || || | || || ||||| || || || || ||||| | || Sbjct 905 TTCAAGGGGGAGCGCAAGACGTTCCAGCCCGAGGAGATCTCGTCCATGGTGCTGACCAAG 846 Query 349565 ATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTA 349624 |||||||| || || || || || | || || || | | || || || || || Sbjct 845 ATGAAGGAGATCGCCGAGGCGTACCTGGGCACGACGGTGAAGAACGCGGTGATCACGGTG 786 Query 349625 CCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGG 349684 || || || ||||| || |||||||| ||||| ||| || |||| || || || Sbjct 785 CCGGCGTACTTTAACGACTCCCAGCGTCAGGCAACGCGAGACGCCGGCACGATCGCTGGT 726 Query 349685 TTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGAT 349744 | || || || | || || || || || || |||||||| || || ||||| || || Sbjct 725 CTCAACGTGCTGCGCATCATCAACGAGCCAACGGCTGCAGCGATCGCGTATGGACTGGAC 666 Query 349745 AAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGAT 349804 || | | | | || ||| | || || || ||| | || ||||| || ||||| Sbjct 665 AAGAAGGGCGGT---GAGCGCAATGTGCTGATCTTCGATCTCGGCGGTGGCACGTTTGAC 609 Query 349805 GTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACA 349864 || || | || | | |||||||| || || || || || || ||||| ||||| || Sbjct 608 GTGTCGTTGCTGTCGATCGAAGAGGGCATCTTCGAGGTGAAGGCGACTGCGGGTGACACG 549 Query 349865 CATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAG 349924 || || || || ||||| ||||| ||||||||||| | || || || || ||| Sbjct 548 CACCTCGGCGGCGAAGACTTTGACAATCGTCTCGTGGACTACTTCGTGGCCGAGTTCAAG 489 Query 349925 CGTCAAGC-TAAAATTGATATTGGAGAT--AATCCTAGAGCAATGCGTCGCCTAAGAACT 349981 || ||||| | ||| | || | || | | | |||| ||||| | || Sbjct 488 CG-CAAGCACCGCAAGGATCT--GACGTCGAACCAGCGCTCGCTGCGACGCCTTCGCACG 432 Query 349982 GCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGAT 350041 || || || ||||| ||||| | || || || | || ||| | || || ||||| Sbjct 431 GCATGCGAGCGTGCGAAGCGGACGTTGTCGTCGTCGACGCAAGCGCACATCGAGATTGAC 372 Query 350042 TCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTA 350101 || || ||| ||| || ||| | || || ||||| || || || || | Sbjct 371 TCGCTGTTTGACGGCGTCGACTTCAACAGCACGATCACGCGTGCGCGCTTCGAGGACATG 312 Query 350102 TGTATGGATCTTTTTAGAGCA--ACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAA 350159 || || || ||| ||| || ||||| || ||||| |||||||| || || | Sbjct 311 TGCGCTGA-CTATTT-CCGCAAGACGATGGAGCCCGTGGAGAAAGTATTGGTGGACGCCA 254 Query 350160 AAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAA 350219 | || ||||| | ||| | | || ||||| || || ||||| || || ||||| || | Sbjct 253 AGATCTCCAAGAGCCAGGTGCACGAGGTAGTCTTGGTGGGTGGCTCGACGCGTATCCCGA 194 Query 350220 AAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATC 350279 | || || ||||| || || || ||||| || ||||| || || | | || || |||| Sbjct 193 AGGTGCAGCAGTTGCTGTCGGACTTTTTCAACGGCAAGGAGCCGTGCAAGTCGATCAATC 134 Query 350280 CAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATC---TGGAAATA 350336 | || || || || || | ||||| || || |||||| | ||||| | || | | Sbjct 133 CGGACGAGGCCGTGGCGTTCGGTGCCGCCGTGCAGGCAGCGATTTTGACGGGTGAGGACA 74 Query 350337 AGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGG 350391 || || || | | ||||| || || || ||||| || || || ||||| || Sbjct 73 AGTCGTCCAAGCTGCAGGATCTGTTGCTGCTGGATGTGACGCCGCTGTCGCTGGG 19 >seq9 Length=86499 Score = 156 bits (172), Expect = 1e-32 Identities = 928/1472 (63%), Gaps = 18/1472 (1%) Strand=Plus/Plus Query 349205 GGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAA 349264 || |||||| | ||||| || || || || || | || ||||| || || || || || Sbjct 46416 GGTATCGATCTCGGTACGACCTACTCGTGCGTCGGCGTGTGGCAGAACGACCGCGTCGAG 46475 Query 349265 ATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACT 349324 || || || || || || |||||| | || ||||| || ||||| || || || || || Sbjct 46476 ATCATCGCCAACGACCAGGGTAACCGCACGACGCCGTCGTACGTCGCCTTCACGGACACG 46535 Query 349325 GAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTT 349384 |||||| | || |||||| | || || || || | || || | | || ||||| Sbjct 46536 GAGCGTCTCATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACGCCACCAACACGGTG 46595 Query 349385 TTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACACAATCTGATCT 349443 || ||||| ||||| || ||||| | ||||| | | || | || | || | Sbjct 46596 TTCGATGCCAAGCGTCTCATTGGCCGCAAGTTCAGCGACCCGATTGTC-CAGGCGGACAT 46654 Query 349444 AAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGA 349503 || || | ||||| || || || | ||||| || || || ||| | Sbjct 46655 CAAGCACTGGCCTTTCACGGTGTCGCCGGGCGCTGGTGACAAGCCGCAGATCACGGTCCA 46714 Query 349504 ATATAAAGGTGAA-CAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTTA 349562 | || || || | || || || || || || || || || ||||| | | | Sbjct 46715 GTTCAAGGGCGAGTCGAAGACC-TTCCAGCCGGAGGAGATCTCGTCGATGGTCCTCATCA 46773 Query 349563 AAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTG 349622 | ||| || | ||||| || | | || | || | | || || ||||| | Sbjct 46774 AGATGCGTGAGGTCGCTGAGGCCTTCATCGGCAAGGAGGTCAAGAACGCCGTCATTACGG 46833 Query 349623 TACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGG 349682 | || ||||| || || || | |||||| || || || |||||||| |||||| | Sbjct 46834 TCCCGGCCTACTTCAACGACTCGCAGCGTCAGGCCACGAAGGATGCTGGTGCCATTGCCG 46893 Query 349683 GGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTG 349742 | | || || || | || || || || || || ||||| || || || || || |||| Sbjct 46894 GCCTCAACGTGCTCCGTATCATCAACGAGCCGACGGCTGCCGCCATCGCTTACGGTCTTG 46953 Query 349743 ATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTG 349802 | || | | | | || || | || || || ||| | ||||| ||||| || | Sbjct 46954 ACAAGAAGGGCGGT---GAGCGCAACGTGCTCATCTTCGATCTTGGTGGCGGTACCTTCG 47010 Query 349803 ATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATA 349862 |||| || || || | |||| ||||| || || || || || || || |||||||| | Sbjct 47011 ATGTGTCGCTCCTGAGCATTGAGGAGGGTATCTTCGAGGTCAAGGCTACGGCTGGTGACA 47070 Query 349863 CACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTA 349922 | ||||||||||| || ||||| ||||| || ||||| || || || || | Sbjct 47071 CGCATCTTGGTGGTGAGGATTTCGATAACCGCCTCGTCGACCACTTCACGGCCGAGTTCA 47130 Query 349923 AGCGTCAAGC-TAAAATTGATAT-TGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAAC 349980 |||| ||||| | ||| | ||| || | | || | ||||| || | || Sbjct 47131 AGCG-CAAGCACCGCAAGGATCTCACGAG-CAACCAGCGTGCTCTTCGTCGTCTGCGTAC 47188 Query 349981 TGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGA 350040 || || || || |||||||| | | || || | |||| ||| || || ||||| Sbjct 47189 GGCCTGCGAGCGCGCTAAGCGCACGCTCTCGTCGTCGGCCCAGGCCTACATCGAGATTGA 47248 Query 350041 TTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATT 350100 || || ||||| || ||| || | || || |||||||| || || || | Sbjct 47249 CTCGCTCTTCGATGGTGTCGACTTCAACTCGACCATCACGCGTGCTCGTTTCGAGGACCT 47308 Query 350101 ATGTATGGATCTTTTTAGAGCA--ACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCA 350158 || ||| || || ||| || ||||| ||||| || || || | || || Sbjct 47309 CTGCGCGGA-CTACTT-CCGCAAGACGATGGAGCCTGTTGAGAAGGTGCTCCGTGACGCC 47366 Query 350159 AAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCA 350218 || | || || | ||| | | || || || | || ||||| || || |||||||| Sbjct 47367 AAGCTCTCGAAGAGCCAGGTGCACGAGGTTGTCCTTGTCGGTGGCTCGACCCGTATTCCG 47426 Query 350219 AAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAAT 350278 || || || ||| | || || || || || || ||||| || || | | || || || Sbjct 47427 AAGGTCCAGCAGCTCCTGTCGGACTTCTTCAACGGCAAGGAGCCGTGCAAGTCGATCAAC 47486 Query 350279 CCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTAT-TTTATCTGGAAATAA 350337 || ||||| |||||||| | ||||| | || ||||| |||| | | | | || | Sbjct 47487 CCCGATGAGGCTGTTGCCTTCGGTGCCACGGTCCAGGCTGCTATCCTCAGCGGCAACGAC 47546 Query 350338 GAGTTCTAAAA--TTGATGATCTATTACTACTAGATGTAACTCCACTTTCGCTTGGATTA 350395 ||| | || | | ||||| | || || ||||| || || || ||||| || | Sbjct 47547 CAGTCGGAGAAGCTCCAGGATCTGCTCCTCCTCGATGTGACCCCGCTGTCGCTCGGTCTC 47606 Query 350396 GAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTACCTACAAAA 350455 || || | |||| || ||||| || || || | || | || || || || || Sbjct 47607 GAGACGGCCGGTGGTGTCATGACGACGCTGATCCCGCGTAACACGACGGTCCCGACCAAG 47666 Query 350456 AAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATTCAAGTATTT 350515 ||| | || || || || || | || || || ||||| | || || || || || Sbjct 47667 AAGACGCAGACGTTCTCGACGTACGCGGACAACCAGCCTGGTGTGCTTATCCAGGTCTTC 47726 Query 350516 GAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACCCTAAGTGAA 350575 || ||||| ||| | || || || || ||||| | || | ||| || Sbjct 47727 GAGGGTGAGCGTTCGATGACGCGCGACAACAACCTCCTTGGCAAGTTCAACCTCGATGGC 47786 Query 350576 ATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATTGATTCAAAT 350635 || || || ||||| | || || || ||||| || ||| | ||||| |||||| | || Sbjct 47787 ATCCCGCCGATGCCGCGTGGCGTGCCGCAGATCGACGTCACGTTCGACATTGATGCCAAC 47846 Query 350636 GGTATTTTAAATGTTACCGCAGTTGAAAAATC 350667 ||||| | || || | || ||||| || || Sbjct 47847 GGTATCCTGAACGTGTCGGCCGTTGAGAAGTC 47878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515000850587180