Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq208 342 6e-89 seq69 147 2e-30 seq215 143 3e-29 seq77 111 2e-19 seq51 87.8 2e-12 >seq208 Length=29794 Score = 342 bits (378), Expect = 6e-89 Identities = 552/777 (71%), Gaps = 20/777 (3%) Strand=Plus/Minus Query 53196 TGCGCGTCGCCTTGGGTATCCACGGTGACGACTAC-ACGCGTGTCCGTGAGACGTACGAC 53254 ||||||||||| | || |||||| ||||| | |||| | | ||||||||||| Sbjct 13385 TGCGCGTCGCCGTCGGCATCCACAAGCACGACATCGACGCC-GCGCTCGAGACGTACGAG 13327 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 | ||| |||| | ||| |||||||| ||||| || ||||||||||| || ||| Sbjct 13326 TACATGTCGCAAAGCTTCTTCACGCACGCGACGCCGACGCTGTTCAACGCCGGCACGCCG 13267 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 | ||| ||| ||||| ||||||||| | || |||||||| ||||||||||| |||||| Sbjct 13266 CGCCCGCAGCTGTCGTCGTGCTTCCTGCTCGCCATGAAGGACGACTCGATCGAGGGCATC 13207 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 || || ||||||||| |||| || ||||||||||||| | || || |||||| | Sbjct 13206 TATGACACGCTCAAGCAGTGCGCTTGCATCTCCAAGTGGGCCGGCGGCATCGGTGTTAGT 13147 Query 53435 -TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT-G 53492 ||| | ||| |||| |||| | | | ||| || ||||||||| ||| ||| | Sbjct 13146 GTGCAC-AACATCCGCGCGACCAACTCGTACATCCGCGGCACGAACGGC-TCGTCGAACG 13089 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||||||| ||||| ||||| |||||| ||||||| || || || | |||||||| | Sbjct 13088 GCCTCGTGCCCATGCTGCGCGTGTTCAACGACACGGCGCGTTATGTGGATCAGGGTGGCG 13029 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 | ||||||||||| |||||||| || ||||| |||||||||||||||||||| | |||| Sbjct 13028 GTAAGCGCAAGGGCTCGTTCGCGATGTACCTGGAGCCGTGGCACGCCGACATCTTCGAGT 12969 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC---CGTGACCTGTT-T 53668 | ||||| || ||| || || |||| | ||| | || ||||| || || | Sbjct 12968 TCCTCGACCTCAAGAAGAACCACGGCAACGA---GCTGCACCGCGCGCGTGATCTCTTCT 12912 Query 53669 ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTAC 53728 || || ||||||| || || || |||||| | || ||| ||| |||||| | Sbjct 12911 AC-GCGATGTGGATCCCCGATCTGTTCATGAAGCGCGTTGAGGCCAACGGCGAGTGGAGC 12853 Query 53729 CTGATGTGCCCGAACGAGTGCCCCGGCCTC--CAGGGTGTCTACGGTGAGGAGTTTAACG 53786 ||| | |||||||||||| || || ||| || | || ||||| ||||| | | Sbjct 12852 CTGTTCTGCCCGAACGAGGCGCCGGGTCTCTACACGACGTGG--GGTGACGAGTTCGAGG 12795 Query 53787 AGATGTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAG 53845 | |||| | ||||| || | |||||||| |||| | || |||| || Sbjct 12794 CGCTGTACCACCAGTACG-AGCGCGAGGGCCGCGCGCGCAAGACGATCCGCGCGCAGCAG 12736 Query 53846 GTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905 | ||| || |||||| || ||| | |||||||| |||||||||||| ||||||| Sbjct 12735 CTCTGGTTCGCGATCCTCGAGTCGCAGATCGAGACGGGCACGCCGTACATGCTCTACAAG 12676 Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 || ||| |||| ||| |||||| ||||| ||||| ||| ||||||||| Sbjct 12675 GACTCGTGCAACCGCAAGTCGAACCAGCAGAACCTCGGCACGATCCGCTCGAGCAAC 12619 Score = 176 bits (194), Expect = 5e-39 Identities = 325/469 (69%), Gaps = 17/469 (4%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| ||||| | ||||| ||||| || |||||||| || |||||| |||||||| Sbjct 12117 CGCAACTCGCTGCTGCTCGCGCCGATGCCGACGGCGTCGACCGCGCAGATCCTGGGCAAC 12058 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| || ||||||||| |||||||||||| ||| ||||| || ||||| ||| Sbjct 12057 AACGAGTCGATCGAGCCGTTCACGACCAACATGTACAACCGCCGCGTGCTTGCAGGCGAG 11998 Query 55604 TTTGTCATGATC---AACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAAC 55660 | ||| |||| |||||| |||| | ||||| || || || | |||| Sbjct 11997 T---TCACGATCGTGAACAAGTACCTGATGAAGGAGCTCATCGAGCTCGGTATCTGGACG 11941 Query 55661 CCGCAGAT---CAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTG---GAG 55714 || || | ||| | ||| || || || || || || ||||| || | | Sbjct 11940 CCCGAGGTGCGCAA-CCAGATCCTGCACG--ACCACGGCTCAGTGCAGAACGTGCGCGTG 11884 Query 55715 ATTCC-TCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCT 55773 || || ||| | ||||||| ||| ||||||||||||||| |||||| | Sbjct 11883 ATCCCGGATGC-CGTGAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGGCCGT 11825 Query 55774 GATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTT 55833 | | || ||| || || || || || |||||| |||| |||||| || ||| | Sbjct 11824 GCTCGATATGGCCGCCGACCGCGGCGCCTACATCTGCCAGAGCCAGTCGCTCAACGTGCA 11765 Query 55834 CATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGG 55893 ||| | | | || | | |||| ||| || |||||||| || | |||||||||||| Sbjct 11764 CATCGCGGAGCCGACGATCAGCAAGCTGACGTCCATGCACTTCTATGCGTGGAAGAAGGG 11705 Query 55894 ACTCAAGACGGGTATGTACTATCTGCGGACCCGCGCCAAGGCCAAGGCG 55942 || ||||||||||||||||| ||||| | ||| | |||||| | ||| Sbjct 11704 TCTTAAGACGGGTATGTACTACCTGCGCAGCCGACCGAAGGCCGATGCG 11656 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 55855 CAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTA 55914 |||| ||| || ||||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 11623 CAAGCTGACGTCCATGCACTTTTACGCGTGGAAGAAGGGTCTCAAGACGGGTATGTACTA 11564 Query 55915 TCTGCGGACCCGCGCCAAGGCCAAGGCG 55942 || || | ||| | |||||| | ||| Sbjct 11563 CCTCCGCAGCCGACCGAAGGCCGATGCG 11536 >seq69 Length=49210 Score = 147 bits (162), Expect = 2e-30 Identities = 343/510 (67%), Gaps = 7/510 (1%) Strand=Plus/Plus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 |||| || ||||| || ||||||||||| || || |||||||| | ||| ||||| Sbjct 8522 ATCAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATA 8581 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | ||||| || || |||||||||||| || ||| || || ||||| | || | Sbjct 8582 GAGCAGAACGAGCCCGAGAAGAAGATGCCCTCAACAGCAGCGAACGCGACGATACGCTCG 8641 Query 74904 GCGAA--CGGTGCATCGGAAGTC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACC 74960 ||||| ||| || || |||| ||| | | ||||| | || ||| | || | Sbjct 8642 GCGAACGCGGCGCGGCGCGAGTCGCACCACTTAAGCGCCCAGTGCGC-CTTCTTCTGCAC 8700 Query 74961 GCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTC-TTCGGGATCCTTGACGA 75018 ||| |||| || ||||| || ||| ||| |||||| || || ||||||| | Sbjct 8701 GCAGGGGATCGTCTCGATGGCGCGGAGAAGGTGGTTCTTCTCGGTCTGG-TCCTTGATGT 8759 Query 75019 GCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACG 75078 | |||| || | || |||||| |||||| || || ||| | |||| | Sbjct 8760 ACGTGTCGATGAGCAGCGAGTACACCTCCGAGTGGATGTTCTCAATCGCAATCTGGAAGC 8819 Query 75079 CGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCT 75138 | ||||| | |||||||| | || ||| || || | || ||||| ||| |||| Sbjct 8820 CATAGAAGCAACGCGCCTCAGGAACCTGCACCTCGCTGCTGAAGTTCATCGCGAGGTTCT 8879 Query 75139 CCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCT 75198 | |||||||||| || ||| ||||| || || || || ||||| |||| ||||| Sbjct 8880 CGTTGACGATGCCATCACTGGCCGCGAAGAACGCGAGCACGTGCTTGATGAAGTAGCGCT 8939 Query 75199 CATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCG 75258 | | ||| ||||| |||| ||| ||||| ||||| | | || ||||| || ||| Sbjct 8940 CGTTGTCCGTGAGGTTGTTCCAGTCCTTGAGGTCGTGGACGAGGTCGATCTCTTCAGCCG 8999 Query 75259 TCCAGAAACTCCCAATCGCCTTTTTGTACA 75288 ||||||| ||| | ||||| ||||||| Sbjct 9000 TCCAGAAGCTCGCCTCGGCCTTCTTGTACA 9029 >seq215 Length=29001 Score = 143 bits (158), Expect = 3e-29 Identities = 308/454 (68%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || || ||||| ||||| ||||||| ||| | |||||||| || || ||||| | Sbjct 10244 CCTGTGCCAATGCCTTCTGCGCCGTTGATCAGCAGCATCGGCAGGATCGGCACGTAATAG 10185 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAA---CGGAATTGTCAGCC 151992 | ||||||||| | | || || || |||||| ||| | || || ||| | Sbjct 10184 TGGGGCTCCACCGGGTACCCATCGTCGTCCACGTAGCTCAGCAGCGCGTCATCGTCCTCT 10125 Query 151993 GGATCGAATATCCGTCGAGTCATAGGACTCAAACG-CGTGAAGATGTATCGGGAGCTGGC 152051 ||| || | | | || || || || | | ||||||||| || || | || || Sbjct 10124 GGA---AACAGCAGACGCGTG-TATTTCTGCAGCAACGTGAAGATATAGCGCGGACTCGC 10069 Query 152052 CGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAG 152111 || |||||||| || || ||||| ||||||||||| || || | || | | Sbjct 10068 GGCGTCCTTGCCGCCCTGAAGGCGCGTGCCAAACTGTCCCGACGGATACAGCAACGGCAA 10009 Query 152112 GTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTC 152171 ||||||||| || || | | ||| |||| || |||||||| ||||| ||| || Sbjct 10008 GTTGTTGGCACCGACATAGTCCTGTGCCATGTTGACAATCGTCGAGTGCAGCGACGCCTC 9949 Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGAT-GTATCCCGCCAACTGCGCCACCTTCATGT 152230 |||||||| ||||| || ||||| || | ||| || || | |||||| ||||| | | Sbjct 9948 GCCGTGGTGGTACGCAGTGTGCTC-GCTACAGTAACCAGCGAGCTGCGCGACCTTGACCT 9890 Query 152231 CCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAAC 152290 || ||||||| || ||| ||||| ||| | | |||||||||||| || || | | Sbjct 9889 CCTTCGTCAGCTTGCGCTTCAGACACGCGAACAGCACCTTGCGCTGCGAGACCTTGAGCC 9830 Query 152291 CGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 |||| |||||| || | ||| ||| | |||| Sbjct 9829 CGTCGACCACGGACGGTAGCGACCGCGCGTTGTC 9796 Score = 109 bits (120), Expect = 6e-19 Identities = 175/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| || || || | || || || |||||||| || ||| ||||| || || ||| Sbjct 10091 GTGAAGATATAGCGCGGACTCGCGGCGTCCTTGCCGCCCTGAAGGCGCGTGCCAAACTGT 10032 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || ||| | || | || ||||||||| || ||| ||| || |||| ||||||| Sbjct 10031 CCCGACGGATACAGCAACGGCAAGTTGTTGGCACCGACATAGTCCTGTGCCATGTTGACA 9972 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCAC-GTAGCC 117483 ||||| || || |||||| || ||||| ||||| || ||||| || || ||| || Sbjct 9971 ATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGGTACGCAGTGTGCTC-GCTACAGTAACC 9913 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCAC 117543 || ||||| || ||||| | || |||||| || ||| || || || | | ||| Sbjct 9912 AGCGAGCTGCGCGACCTTGACCTCCTTCGTCAGCTTGCGCTTCAGACACGCGAACAGCAC 9853 Query 117544 CTTGCGCTG 117552 ||||||||| Sbjct 9852 CTTGCGCTG 9844 >seq77 Length=47021 Score = 111 bits (122), Expect = 2e-19 Identities = 246/363 (68%), Gaps = 21/363 (6%) Strand=Plus/Minus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 ||| | ||||| ||||||||| | ||||| ||| ||||| | | || || || || Sbjct 34021 CGCGAGCTCGACAAACTCACGCACACTGTGGCACTCGCCCGTCGCGACGACAAAGTCCTC 33962 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 ||| || ||||||||||| ||||||| | ||||||||| || || ||||| Sbjct 33961 GGGGGTCTCGTGCTGCAACATCTTCCACATGCACTCGACGTAGTCGCGCGCATGGCCCCA 33902 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGCTTGGCCGTCTT--GTTCCA---- 124654 ||||||||| || ||||| || |||| || | | ||| | | ||| Sbjct 33901 GTCGCGCTTCGCCTCCAGATTACCGA-------TGTACAGACAGTCCTCAATACCAGCGT 33849 Query 124655 --CTCCGCCAAAC--CCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAG 124710 | ||| ||| | | || ||||| || ||||||||| | ||||||||| Sbjct 33848 TGATGCGCACAACGGCACGCGTGATCTTACGGGTCACAAACGTTGGTCCGCGTCGCGGGC 33789 Query 124711 ACTCGTGGTTGAACAGAATGCCAGTACAC-GCAAACATCCCGTACGACTCGCGGTAGTTT 124769 |||||||||||| || ||||| || || |||||||| ||||||| |||||||||| || Sbjct 33788 TCTCGTGGTTGAAGAGGATGCC-GTTTACGGCAAACATGCCGTACGCCTCGCGGTAG-TT 33731 Query 124770 TTCGTC-ATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGG 124828 || | |||| || |||| |||||| || || || || || ||||| ||||| Sbjct 33730 CACGACGCTCCAGTAAGCAAACTGCTTGGCGACACCGTACGGCGAGCGCGGGTAAAATGG 33671 Query 124829 GGT 124831 || Sbjct 33670 CGT 33668 >seq51 Length=53042 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATCG-GGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT 152086 ||| |||||||| || || | || | ||||| || ||||| || || || || ||||||| Sbjct 40556 CGTAAAGATGTAACGAGGCGATG-CTGCATCTTTACCACCCGCTAGTCGAGTACCAAACT 40614 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 | || || | || | || |||||| ||||| |||| || |||| || | Sbjct 40615 GACCGTTTGGAGACAACAGATGGATATTGTTGCTTCCCACAAAATCTTGGGCCATGTTGA 40674 Query 152147 CAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 ||||||||| | |||||| |||||||||||| ||||| | ||||| | | ||||| Sbjct 40675 TAATCGTGCCGTTGAGACTCTGTTCACCGTGGTGGTACGCAGAATGCTCGGATACGTATC 40734 Query 152207 CCGCCAACTGCGCCACCTTCATGTC 152231 | | | ||| || ||||| || || Sbjct 40735 CACCAAGCTGAGCAACCTTAATTTC 40759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547126666988000