Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq208 376 3e-99 seq215 158 1e-33 seq69 122 1e-22 >seq208 Length=29794 Score = 376 bits (416), Expect = 3e-99 Identities = 1096/1664 (66%), Gaps = 49/1664 (3%) Strand=Plus/Plus Query 80025 GGCCTTTGCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTA 80084 |||||| | || | ||||| |||||||| |||||||| || ||||||||||| | || Sbjct 11662 GGCCTTCGGTCGGCTGCGCAGGTAGTACATACCCGTCTTAAGACCCTTCTTCCACGCATA 11721 Query 80085 CAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTG 80144 | |||||| || | ||||| | || || | | | ||| | ||| || ||||| Sbjct 11722 GAAGTGCATGGACGTCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGAGCGACTG 11781 Query 80145 AGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAAT 80204 ||| |||||| | || || || || || ||||| || | | | ||| || || Sbjct 11782 GCTCTGGCAGATGTAGGCGCCGCGGTCGGCGGCCATATCGAGCACGGCCTTCTGCTTGAT 11841 Query 80205 TTCCCATAC-----TGTACGATACACCTT-ACGAAGCTCCTCTGGA--ATGTCCAGATTT 80256 ||||| || ||||| | | |||| ||| || | | ||| | | || || Sbjct 11842 CTCCCACACCGTCTTGTAC--TTCTCCTTCACG--GCATC-CGGGATCACGCGCACGTTC 11896 Query 80257 TGCACACTGCCACCGTCCTTTACAATTTGATTTTTCAATTCAGACGTCCAGACACCAAGC 80316 ||||| ||| ||| | | || || || || || | |||||||| ||| ||| Sbjct 11897 TGCACTGAGCCGTGGTCGTGCAGGATCTGGTTGCGCACCTCGGGCGTCCAGATACCGAGC 11956 Query 80317 TTGTGCAGATCTTTCACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGA 80376 | | || || |||| |||| |||||| | || ||||| || || || ||| Sbjct 11957 TCGATGAGCTCCTTCATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGG 12016 Query 80377 CGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCC 80436 || |||| ||| || ||| | ||||| | | ||||||||| || |||||||| || Sbjct 12017 CGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCCAGGATCTGCGCG 12076 Query 80437 GTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGA-- 80494 || ||||||||||||||| ||| || ||| || || |||| |||| || | || Sbjct 12077 GTCGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACACCGTACTGCGCGACG 12136 Query 80495 -TATCCTCG--CGCAAATCTGACCAAAAATCAACCCCAACGCTGTGAC--CCCACATGTC 80549 | ||| | ||| | | || | | | | || ||||| |||||||||| Sbjct 12137 CTGGCCTTGAGCGCGGCCCAGTCCCAGAGGCCGGACGTCGGC-GTGACGCCCCACATGTC 12195 Query 80550 GTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGT 80609 || ||| |||||||||| | | || || ||| || | | |||||||||| | | Sbjct 12196 GTACTGGAAGATGCCCTTGCTCACGGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTC 12255 Query 80610 CTTGGCCAGCTCACACGA---CTCCATAAGGGCCGCGTGATAAATGCA----CTCAAAGA 80662 ||| || ||||| ||| |||||| | |||| || | || ||| |||| Sbjct 12256 CTTCGCGAGCTCCATCGAGGCCTCCATC-GCGCCG------AAGTACAGCGTCTCGAAGA 12308 Query 80663 CGCCCTTGTTCACACCGCGCGCCT-GTGGGTCGTCGAACGACAAGCCCATCATCATGAAC 80721 | |||||| | |||| |||| || | || || |||| ||||||| | |||||| Sbjct 12309 TGTTCTTGTTGAGCTCGCGGGCCTCGTCGCTC-TCAAACGCGTAGCCCATGAGGATGAAC 12367 Query 80722 ACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCG 80781 |||| || || ||||| ||||||||| ||||||||||||||||| ||| |||||| Sbjct 12368 GCGTCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTTCGCTCA 12427 Query 80782 GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACC 80841 ||||| || || ||||| |||| | |||||||| ||| |||||||| || || ||| Sbjct 12428 GCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACC 12487 Query 80842 CGTGTAACATCATGAAGTTTCTGAAAGTCGAA---TTGGTTCCCCTTCACAAATGCCGGA 80898 || | || | || |||| |||||||| | || | |||||||| ||| Sbjct 12488 TTGGTGATGTCGTACAGCTTCTTGAAGTCGAAGGTCTTGTCGTCGTTCACAAA-CTTGGA 12546 Query 80899 AGGCTC-AGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGAT 80957 || | | |||||| || |||||||| || ||||| || | || |||| | | Sbjct 12547 CAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGACGTGTACTCAAGCAC 12606 Query 80958 TTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTT 81017 || ||| | || || || || || ||||| | |||||| |||||| ||| Sbjct 12607 CTCGCAGCAGAGGTTGCTCGAGCGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTT 12666 Query 81018 GCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGC 81077 ||| | |||||||||| ||||||||| || || ||||||| ||| |||| |||||| || Sbjct 12667 GCACGAGTCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGC 12726 Query 81078 GTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGC 81137 | ||| | || |||| || | |||||| ||| ||| | | |||| | Sbjct 12727 GAACCAGAGCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTG 12786 Query 81138 GTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGT-GAGGTCTGGGCACTCGTTAGGG 81195 ||| ||| | ||||||| | |||| | || || ||| | || |||||| ||| Sbjct 12787 GTACAGC-GCCTCGAACTCGTCACC-CCACGTCGTGTAGAGACCCGGCGCCTCGTTCGGG 12844 Query 81196 CACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAG 81255 || | |||| ||| ||| || | ||| || ||||||||| || |||||||| Sbjct 12845 CAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAACAGATCGGGGATCCAC 12904 Query 81256 AGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCG 81315 | ||| ||| || || || ||| | ||| | || ||||| | ||| Sbjct 12905 ATCGCGTAGAAGAGATCACGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTCTTGAGGTCG 12964 Query 81316 AGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG- 81374 || || || | |||||| || ||||| |||||||| |||| |||| ||| |||||||| Sbjct 12965 AGGAACTCGAAGATGTCGGCGTGCCACGGCTCCAGGTACATCGCGAACGAGCCCTTGCGC 13024 Query 81375 --ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATG 81432 || ||||||||| | || ||||| || || |||| || || |||| ||| || | | Sbjct 13025 TTACCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACG 13084 Query 81433 ATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTG 81492 | || | ||| |||||||| || ||| ||| | ||||| | ||| Sbjct 13085 AGGCCGTTCGACGAGCCGTTCGTGCCGCGGATGTACGAGTTGGTCGCGCGGATGTTGTGC 13144 Query 81493 ATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCA 81552 | || ||||||||| || | |||||| || || ||| ||| | || | || ||| Sbjct 13145 ACACTAACACCGATGCCGCCGGCCCACTTGGAGATGCAAGCGCACTGCTTGAGCGTGTCA 13204 Query 81553 TAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGG 81612 || || |||||||| || | |||||| | |||| ||| || |||| ||| ||| Sbjct 13205 TAGATGCCCTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGG 13264 Query 81613 CTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAA 81656 | | |||||| |||||||| || || |||||||| |||| Sbjct 13265 CGCGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAA 13308 >seq215 Length=29001 Score = 158 bits (174), Expect = 1e-33 Identities = 201/274 (73%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 31977 CGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAA 32036 ||||| ||||| |||||| || |||||||||||| | | ||| || || ||| || Sbjct 9819 CGTGGTCGACGGGCTCAAGGTCTCGCAGCGCAAGGTGCTGTTCGCGTGTCTGAAGCGCAA 9878 Query 32037 CCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTAC-GTGGCAGAGCAAACGGCCT 32095 ||| ||| || | ||||| |||||||| | || ||| || || ||||| || || | Sbjct 9879 GCTGACGAAGGAGGTCAAGGTCGCGCAGCTCGCTGGTTACTGTAGC-GAGCACACTGCGT 9937 Query 32096 ATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCG 32155 | |||||||||||||||||||| || || ||||||||| | || ||| ||| ||||| Sbjct 9938 ACCACCACGGCGAGGCGTCGCTGCACTCGACGATTGTCAACATGGCACAGGACTATGTCG 9997 Query 32156 GTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTG 32215 |||| || ||| || || || | || || ||||||||||| || || || || | Sbjct 9998 GTGCCAACAACTTGCCGTTGCTGTATCCGTCGGGACAGTTTGGCACGCGCCTTCAGGGCG 10057 Query 32216 GCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 ||||||| || ||||| | || || |||||||| Sbjct 10058 GCAAGGACGCCGCGAGTCCGCGCTATATCTTCAC 10091 >seq69 Length=49210 Score = 122 bits (134), Expect = 1e-22 Identities = 356/540 (66%), Gaps = 9/540 (2%) Strand=Plus/Minus Query 64321 TGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGGACGGTCGAGGAGGTTGATCTCGCC 64380 ||| || | |||||||| ||| || || |||||||||| || ||| | || |||| | Sbjct 9036 TGGCAGATGTACAAGAAGGCCGAGGCGAGCTTCTGGACGGCTGAAGAGATCGACCTCGTC 8977 Query 64381 AAGGATCTCAGCGACTGGGAAAACCTAAACTCACAGGAACAGC-ACTTCATCAAGTTGGT 64439 | || |||| |||||| | ||||| | | ||| | || ||||||||||| || Sbjct 8976 CACGACCTCAAGGACTGGAACAACCTCA-CGGACAACGAGCGCTACTTCATCAAGCACGT 8918 Query 64440 CCTAGCATTCTTCGCATCAAGTGACGGAATTGTGTTTGAGAATTTGGACCTAAATTTTAC 64499 || || |||||||| | ||||| || || || ||||| | | | || || | Sbjct 8917 GCTCGCGTTCTTCGCGGCCAGTGATGGCATCGTCAACGAGAACCTCGCGATGAACTTCAG 8858 Query 64500 AAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCTATGCGTATCAGGGATTT--AACGAA 64557 | || || ||| | || |||||||| | ||||||| | ||| ||| | || Sbjct 8857 CAGCGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTATGGCTTCCAG--ATTGCGATTGAG 8800 Query 64558 AGTATTCATGGCGAGACGTATTCGCTCATGATTGACAAGTTTGTTCGGGATCCTGTCGAG 64617 | || || ||| ||| ||||| | || |||| || | ||| | |||| Sbjct 8799 AACATCCACTCGGAGGTGTACTCGCTGCTCATCGACACGTACATCAAGGACCAGACCGAG 8740 Query 64618 AAGGATGGACTGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGG 64677 ||| | || || | || || ||||| | ||| || || ||||| | ||| Sbjct 8739 AAGAACCACCTTCTCCGCGCCATCGAGACGATCCCCTGCGTGCAGAAGAAGGCGCACTGG 8680 Query 64678 GCCATCCGGTGGAT-GAATCGTGGGTCGTCGT-TTGGTC-AGCGTCTCGCAGCTTTTGCC 64734 || | |||| || ||| | || || || | | ||||| ||| || || || Sbjct 8679 GCGCTTAAGTGGTGCGACTCGCGCCGCGCCGCGTTCGCCGAGCGTATCGTCGCGTTCGCT 8620 Query 64735 TGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGG 64794 ||| || || || ||||| || || || ||||| ||||| |||||||| || ||||| Sbjct 8619 GCTGTTGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCTATCTTCTGGCTCAAGAAGCGC 8560 Query 64795 GGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCAC 64854 ||||| ||||| || || || ||||||||||||||||| || |||||||| |||||| Sbjct 8559 GGCCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTGATCTCGCGTGACGAGGGTCTCCAC 8500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570217296827200