Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1593 187 6e-42 seq1232 140 8e-28 seq4998 113 1e-19 seq4869 102 2e-16 seq2051 100 7e-16 >seq1593 Length=4925 Score = 187 bits (206), Expect = 6e-42 Identities = 211/283 (75%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 7445 TATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAA 7504 ||||||| || ||||||| ||||||||| | | ||||| | ||| ||| | | |||| Sbjct 3605 TATATTTGATTTTTGGTGCTTTTTCTGGTGTAGTTGGTACAACATTATCTCTTTTAATAA 3546 Query 7505 GGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACG 7564 | | |||||||| || ||| |||||| || | || ||| || | || || | Sbjct 3545 GAATGGAATTAGCACAACCTGGTAATCAAATTTTTATGGGAAATCATCATTTATATAATG 3486 Query 7565 TTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAG 7624 || || |||| |||||||| || | |||||||||||| | |||||||| || | || | Sbjct 3485 TTGTTGTTACTGCGCATGCTTTCTTAATGATTTTCTTTATGGTTATGCCTATTTTAATTG 3426 Query 7625 GCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAA 7684 | || ||||| || || ||||| ||||||||||| ||||| || ||||||||||| || | Sbjct 3425 GAGGCTTCGGTAACTGGTTCGTACCTTTAATGATCGGTGCACCAGATATGGCTTTCCCTA 3366 Query 7685 GGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 | | || ||||| |||||||| ||| |||| ||||| ||||| Sbjct 3365 GAATGAATAATATTAGTTTTTGGTTATTACCTCCTTCATTATT 3323 Score = 98.7 bits (108), Expect = 2e-15 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || || ||||| || |||||||||||||| | | |||||| ||||| || || Sbjct 2926 TTCAGGGTGTCCGAAAAACCAAAATAAATGTTGATATAATACAGGATCACCTCCACCAGA 2985 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||| | || |||||| ||||||||||||||||| |||| Sbjct 2986 TGGATCATAGAATGAAGTATTTAAATTTCTATCAGTTAATAACA 3029 Score = 91.5 bits (100), Expect = 4e-13 Identities = 130/182 (71%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 371365 AATGGTAATTTATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAG 371424 || |||||| |||| | | ||||||||| ||||||| ||| | || || | || |||| Sbjct 3104 AAAGGTAATCTATGAAAACTTAAACCAGGAGCTCTCATGTTATAAATAGTTGAAAGAAAG 3163 Query 371425 TTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCG 371484 || ||||| |||| | || || ||||| | | ||||||||||| || |||||||| Sbjct 3164 TTAATAGCACCTAATAATGATGAAATACCAGATAAGTGTAAACTAAAAATAGCTAAATCT 3223 Query 371485 ACGGAACCGCCGGAGTGAGC---TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCG 371541 || ||| || || || || |||| | || ||| || |||||||| || || || Sbjct 3224 ACAGAAGGACCTGAATGTGCTTGTACACTTGA---TAATGGTGGGTAAACAGTCCAACCA 3280 Query 371542 GT 371543 || Sbjct 3281 GT 3282 >seq1232 Length=6767 Score = 140 bits (154), Expect = 8e-28 Identities = 101/117 (86%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||||||||||||||||||| || || |||||||| |||||||||||||| ||||| Sbjct 6214 GAAGATTTGACCATCAGTAATAGAAATTACGTTTGTAGGAATATAAGCAGAAACGTCACC 6155 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | ||||||||| || |||| ||| |||||||||| |||||||| Sbjct 6154 AGCTTGAGTTTCAATAACAGGTAAAGCAGTTAATGAACCACCACCAATTTTTTTATT 6098 Score = 89.7 bits (98), Expect = 1e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 5031 GCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAACATGCTTTA 5090 || || || |||||||||| | |||| |||||||||||||| ||||| ||||||||| || Sbjct 5897 GCTCCTTATACAGGTTGTGCTTTAGGTGAATATTTTAGAGACAATGGAAAACATGCTGTA 5956 Query 5091 ATCATCTACGATGATTTAAGTAAACAA 5117 || | || ||||||||| ||||||| Sbjct 5957 ATTTTTTATGATGATTTATCTAAACAA 5983 >seq4998 Length=1126 Score = 113 bits (124), Expect = 1e-19 Identities = 89/104 (86%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAGGGCAG 6825 |||| |||||||||||||||||||||||||| | ||||||||| || | ||||| ||| Sbjct 228 TTGAAAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAACTTTTTTAAAGG-CAG 170 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| |||| || ||||||| |||||||||||||| || ||| Sbjct 169 CAGTGGGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAAT 126 >seq4869 Length=1162 Score = 102 bits (112), Expect = 2e-16 Identities = 112/147 (76%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 731 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 790 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAAT-ATT 7849 || |||||| || |||||| ||| | |||||| | || | ||||| ||| | || Sbjct 791 GGCTCCCGTCAATTCCTTTGAATTTCGATCTTGCGATTATACTTTTCAGGCGGAGTGCTT 850 Query 7850 TACGCGTTAGCTTAATTAATATAAAAA 7876 |||||||||||| || || |||||| Sbjct 851 AACGCGTTAGCTTGAT--ATCTAAAAA 875 >seq2051 Length=3645 Score = 100 bits (110), Expect = 7e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 372623 AGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTG 372682 ||||| ||||||||| |||| ||||||||||| ||||||| ||||||| ||||| | | Sbjct 1916 AGGTGGCACAGAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGG 1857 Query 372683 TAAAACGATGTATAGGGTCTGACAC 372707 ||| | ||||||||||||||||||| Sbjct 1856 TAACATGATGTATAGGGTCTGACAC 1832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192331652263640