Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950875.1_202016-12-27] 13,060 sequences; 37,817,292 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq106 120 6e-22 seq215 116 8e-21 seq562 93.3 9e-14 seq8429 87.8 4e-12 >seq106 Length=40908 Score = 120 bits (132), Expect = 6e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| ||||| || ||||||| ||||||||||| |||| ||| ||||| || Sbjct 13212 TCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTAATGTCGAGG 13153 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||||| |||||||||||||||||||| || ||||| || | |||||| || ||| Sbjct 13152 TGCTCCTCAATGTGGTGGAAAGCGTGCTGGGCAACGTAGGCGAAACGCATGGCCGGGTGC 13093 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||||| |||| || | || || || |||| || ||||| || Sbjct 13092 TTCCACACCGTACCGACCGTAGGCTCGACCTCACCCGTCAGCATCTTGATGAGCGTCGAC 13033 Query 316342 TTTCCCGCGCCGTT 316355 || || || ||||| Sbjct 13032 TTACCGGCACCGTT 13019 >seq215 Length=29001 Score = 116 bits (128), Expect = 8e-21 Identities = 294/442 (67%), Gaps = 4/442 (1%) Strand=Plus/Minus Query 273618 GTAGACCAACCGGTGCCAATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGG 273677 || |||||||| |||||||| || | || || | ||| | |||| | || || Sbjct 10253 GTCGACCAACCTGTGCCAATGCCTTCTGCGCCGTTGATCAGCAGCATCGGCAGGATCGGC 10194 Query 273678 ACATAATATTCGGGCTCAATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCATCA 273737 || ||||| | |||||| | | |||||||||| | ||| ||| || || ||| Sbjct 10193 ACGTAATAGTGGGGCTCCACCGGGTACCCATCGTCGTCCACGTAGCTCAGCAGCGCGTCA 10134 Query 273738 TCCGTATCAACGAAAACCTTTCGCGTCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCA 273797 || || || | | ||||| | | ||| |||||| || || | | | Sbjct 10133 TCGTCCTCTGGAAACAGCAGACGCGTGTATTTCTGCAGCAACGTGAAGATATAGCGCGGA 10074 Query 273798 CTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAG 273857 ||||| ||||||||| || || || | || |||||||| ||| || ||| | Sbjct 10073 CTCGCGGCGTCCTTGCCGCCCTGAAGGCGCGTGCCAAACTGTCCCGACGGATACAGCAAC 10014 Query 273858 TTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGAT 273917 | ||||||| |||||| || ||||| ||||| || || || ||| || || || Sbjct 10013 GGCAAGTTGTTGGCACCGACATAGTCCTGTGCCATGTTGACAATCGTCGAGTGCAGCGAC 9954 Query 273918 ACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATA-TAACCACTGAACTGAGCAACCTT 273976 ||||||||||||| || || |||| || || | | |||||| || ||| || ||||| Sbjct 9953 GCCTCGCCGTGGTGGTACGCAGTGTGCTC-GCTACAGTAACCAGCGAGCTGCGCGACCTT 9895 Query 273977 CACATCGCTCGTCAAGTTTCGCTTGA-ATGCGGAATACAACACCTTCCGCTGCGAGGGCT 274035 || || |||||| || ||||| | | || | ||| |||||| ||||||||| || Sbjct 9894 GACCTCCTTCGTCAGCTTGCGCTTCAGACACGCGA-ACAGCACCTTGCGCTGCGAGACCT 9836 Query 274036 TGAACCCATCAACGACCGATGG 274057 ||| ||| || || || || || Sbjct 9835 TGAGCCCGTCGACCACGGACGG 9814 >seq562 Length=14249 Score = 93.3 bits (102), Expect = 9e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || |||||||||||||| | Sbjct 13910 ACCACCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 13969 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 |||||||||||| ||||| || || || ||||| ||||||| || || || || Sbjct 13970 AAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATC 14023 >seq8429 Length=554 Score = 87.8 bits (96), Expect = 4e-12 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 283003 TGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTG 283061 |||| |||||||| ||||| || | || || ||||||||| ||||| ||||| ||| Sbjct 1 TGTCCTGGATCTTCTGCTTG-ACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTG 59 Query 283062 ATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATACAA 283111 |||||||| || |||| |||||| ||||| |||||||| || | ||||| Sbjct 60 ATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTTTACCTACAA 109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046564047821240