Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq957 333 3e-86 seq5064 145 8e-30 seq1079 145 8e-30 seq4761 98.7 1e-15 >seq957 Length=6759 Score = 333 bits (368), Expect = 3e-86 Identities = 456/628 (73%), Gaps = 12/628 (2%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||| | || | ||||||||| ||| |||||| | ||||| || || | || Sbjct 5411 GAGCCGTTCCTCCTCGAGAACCCGAACCGTTTCGTGCTCTTCCCGATCCAGGAGAACGAG 5470 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT- 116694 | |||| |||||||| ||||| |||||| |||||||| | || ||| | ||||| Sbjct 5471 GTCTGGCAGATGTACAAGAAGGCTGAGGCGAGCTTCTGGACGGCGGAAGAGATCGACCTC 5530 Query 116695 GTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 || || | | | || |||||| | | | | ||||| |||||| | || |||||||| Sbjct 5531 GTGCACGACCTCAAG-GACTGGAACAACCTCACGGACAATGAGCGCTACTTTATCAAGCA 5589 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGA-GCGTT 116813 |||||| || || ||||| ||||| || ||||||||||||||||| || | ||| | | Sbjct 5590 CGTGCTCGCGTTCTTCGCGGCCAGTGATGGCATCGTCAACGAGAACCTCG-CGATGAACT 5648 Query 116814 TCGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || ||| ||||||||||| | |||||||| |||||||||||||| ||||| || || Sbjct 5649 TCAG-CAGCGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTACGGCTTCCAGATTGCGATT 5707 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCG 116929 |||||| | |||||||| |||| ||| ||||||||||||||| | | | | Sbjct 5708 GAGAACATCCACTCGGAGGTGTACTCGCTGCTCATCGACACGTACATCAAGGACCAGACC 5767 Query 116930 GAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCC 116989 ||| |||| | || | | ||||||||||||||| || || || | ||||||| Sbjct 5768 GAGAAGAACCACC---TTCTCCGCGCCATCGAGACGATCCCTTGTGTGCAGAAGAAGGCG 5824 Query 116990 GAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCC 117049 | |||||||| ||| || | | ||||| |||| |||||| | || || Sbjct 5825 CACTGGGCGCTCAAGTGGTGCGACTCGCGCCGCGCCGCGTTCGCCGAGCGTATCGTCGCG 5884 Query 117050 TTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAG 117109 ||||| || ||||||||| ||||||| |||||| ||| | | || || ||||||||| Sbjct 5885 TTCGCTGCTGTCGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCTATCTTCTGGCTCAAG 5944 Query 117110 AAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGT 117169 || |||||||| ||||| ||||| | ||| |||||||||||||| | ||||||||| Sbjct 5945 AAGCGCGGCCTTATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGACGAGGGT 6004 Query 117170 CTGCATTGCGACTTTGCCTGTTTGCTGT 117197 || || |||||||| || || |||||| Sbjct 6005 CTCCACTGCGACTTCGCGTGCCTGCTGT 6032 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 || || ||||||||||| |||||||||||||| ||||| | ||| ||||||||||| Sbjct 6170 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATT 6229 Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGT 117197 || | ||||||||||| || ||||| || || || |||||| Sbjct 6230 TCGCGTGACGAGGGTCTCCACTGCGATTTCGCGTGCCTGCTGT 6272 >seq5064 Length=2045 Score = 145 bits (160), Expect = 8e-30 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||||| || || |||||||| || || |||||| | |||||||| || Sbjct 205 AAAATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACGATCACCCTGGACGTCGAGCCC 146 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || ||| | | | ||||| | || || | ||||| ||||| ||||| |||| Sbjct 145 TCGGATAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGAT 86 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| ||||| || |||| ||||| || |||||| Sbjct 85 CAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTTTCGGACTAC 26 Query 40867 AACATCCAGAAGGAGGCCACGCTGC 40891 ||||||||||||||| | ||||||| Sbjct 25 AACATCCAGAAGGAGTCGACGCTGC 1 >seq1079 Length=6315 Score = 145 bits (160), Expect = 8e-30 Identities = 164/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || ||||| || || || || ||||| || ||||| |||||||||| | Sbjct 773 AAAGATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCC 832 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||||| | | | ||||| | || || | ||||| ||||| ||||| |||| Sbjct 833 TTCGGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGA 892 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || || |||| ||| ||||| ||||| || |||| ||||| ||| ||||| Sbjct 893 TCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTA 952 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||||||| | ||||| || || ||| | ||| Sbjct 953 CAACATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGC 992 >seq4761 Length=2180 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| |||| ||||| || || |||| ||| ||||| ||||| || |||| ||| Sbjct 1655 GGAATCCCTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGC 1596 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || || ||||||||||||||||||||| | |||||||| || ||| | ||| || | Sbjct 1595 ACGCTTTCGGACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTCCGCCTGCGT 1536 Query 40912 GGCGGCGGC 40920 || || ||| Sbjct 1535 GGTGGTGGC 1527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515073908185600