Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1862 165 7e-36 seq1079 127 2e-24 seq5064 104 2e-17 >seq1862 Length=4717 Score = 165 bits (182), Expect = 7e-36 Identities = 530/816 (65%), Gaps = 16/816 (2%) Strand=Plus/Minus Query 132916 TGCGCAAATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCG 132975 |||||| || ||||| ||||| || || |||| ||||||||||||||| ||| || Sbjct 4025 TGCGCAGGTAGTACATACCCGTCTTGAGACCCTTCTTCCACGCGTAAAAGTGCATGGACG 3966 Query 132976 ACACCACCGAGTAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGA 133035 || | | || || || |||| | || ||||| || ||||| ||| Sbjct 3965 TCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATGT 3906 Query 133036 AAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCT 133095 | | | |||||||||||||| | | | | ||| ||||||||||| |||||| Sbjct 3905 AGGCGCCGCGGTCGGCGGCCATATCGAGCACAGCCTTCTGCTTGATCTCCCACACCGTCT 3846 Query 133096 TGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGG 133155 || | | ||| || | || || || | ||||||||| || |||| ||| Sbjct 3845 TGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACGTTCTGCACTGAGCCGTGGTCGT 3786 Query 133156 CCAAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACGA 133215 || |||| ||| |||| || || || | ||| |||| ||||| ||| | || | | Sbjct 3785 GCAGGATCTGGTTACGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATCA 3726 Query 133216 GATACTGGTTGACCA-CTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGAC 133274 | |||| ||| || | | |||| |||||| || || ||||| | | || | || | | Sbjct 3725 GGTACTTGTTCACGATCGTGAA-CTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGGTC 3667 Query 133275 GTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATG 133334 |||||||| |||| || |||||||||||||| |||||||| || | |||||| ||||| Sbjct 3666 GTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTAGACGCCGTCGGCATC 3607 Query 133335 TACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTC 133394 ||| | || || ||||| | |||||||||| | | || || | || | Sbjct 3606 GGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGGCCTTGAGCGCGGCC 3547 Query 133395 CAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGC 133454 |||||||| || | ||| | || ||| | || | | ||| | || Sbjct 3546 CAGTCCCAGAG---GCCGGA-----CGTCGGCGT----GACGCCCCACATGTCGTACTGG 3499 Query 133455 AAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCC 133514 || || ||| ||||||| || | || ||| | || || |||| || || Sbjct 3498 AAGATGCCCTTGCTCACAGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTTGCG 3439 Query 133515 AGCTCGCAGCTA-GCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGAC 133573 ||||| || | | ||||||| ||| | ||||| | || || ||| | ||||| Sbjct 3438 AGCTC-CATCGAGGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAG 3380 Query 133574 GAACCTGGCATCGTCGCTATCGTAGGCGATGTCGAGAAGAACAAACGCGTCGGCCAAACC 133633 | ||| |||||||| || | ||| | | | || | ||||| || || | ||| Sbjct 3379 CTCGCGGGCCTCGTCGCTCTCAAACGCGTAGCCCATGAGGATGAACGCATCCGCGAGACC 3320 Query 133634 CTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGG 133693 ||| | ||||| |||||| || || || ||||| | ||| | ||||| | || Sbjct 3319 CTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTTCGCTCGGCCTCGGGGATCGG 3260 Query 133694 ATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCG 133729 |||| ||||| |||||||| ||||||||| ||||| Sbjct 3259 GTAGTAGTTGATGTCGATGACCTTGTTGAGGTTGCG 3224 >seq1079 Length=6315 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || |||||||| || | ||||| ||||| Sbjct 986 CACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTC 927 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| |||| || ||||||||||| ||||| || ||||||||||| Sbjct 926 GAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTG 867 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || || | || | | |||||| |||||| |||| || | ||| || Sbjct 866 GATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTT 807 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||||||| || || || |||||||| Sbjct 806 GCCGGTCAGAGTCTTGACGAAGATCTGCAT 777 >seq5064 Length=2045 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| || | ||||| ||||||||||| || || Sbjct 6 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 65 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || ||||||||||| ||||| || ||||||||||| || || || || Sbjct 66 GCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTCTGCTTG 125 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | | | |||| | |||||| || | ||| | ||| || || || || || Sbjct 126 ACATTGTCAATGCTATCCGAGGGCTCGACGTCCAGGGTGATCGTCTTCCCCGTGAGGGTC 185 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 186 TTCACGAAGATCTGCAT 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433711118331520