Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1862 504 6e-138 seq957 214 2e-50 seq1079 113 4e-20 >seq1862 Length=4717 Score = 504 bits (558), Expect = 6e-138 Identities = 1271/1908 (67%), Gaps = 44/1908 (2%) Strand=Plus/Minus Query 22099 GGCGGTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATA 22158 ||| | |||||| || || ||||| || || | || |||| | |||| || || || Sbjct 4072 GGCCGCCTTGTCGACCGTGAACTGGATCGCATCGGCCTTCGGTCGGCTGCGCAGGTAGTA 4013 Query 22159 CATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATA 22218 ||| |||||||| |||||| |||||||||||||||| || || ||||||| || | Sbjct 4012 CATACCCGTCTTGAGACCCTTCTTCCACGCGTAAAAGTGCATGGACGTCAGCTTGCTGAT 3953 Query 22219 ACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATC 22278 ||||| | |||| ||| |||| |||||| ||||| ||| | || || || || Sbjct 3952 CGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATGTAGGCGCCGCGGTC 3893 Query 22279 GGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCT 22338 ||||||||||| | || | | | || ||||| || ||||||||| | | | Sbjct 3892 GGCGGCCATATCGAGCACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTT 3833 Query 22339 GATCTCTAACGGTATCGATTCGATCCT-CTGGACGGACCCGTTATTGTGTATGATCAAAT 22397 | | ||| ||| | || | | ||| || || |||| | ||| | |||| | Sbjct 3832 CACGGCATCCGGGATC-ACGCGCACGTTCTGCACTGAGCCGTGGTCGTGCAGGATC---T 3777 Query 22398 TTTTAATCGTATCGT---TCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGT 22454 ||| | ||| |||| | |||| || | | || || | ||| | || Sbjct 3776 GGTTACGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATCAGGTACTTGT 3717 Query 22455 TCACCA-CTTGAAACTCGCCGGACAAG-ACGCGGCGTTGGTAAATGTTGGATGTGAACGG 22512 |||| | | |||| |||||| | |||| |||||||| | ||| ||||||| |||||||| Sbjct 3716 TCACGATCGTGAA-CTCGCCTG-CAAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGG 3659 Query 22513 TTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAA 22572 |||| || || ||||| || || ||||| ||||| || || |||||||||||||| | Sbjct 3658 CTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTAGACGCCGTCGGCATCGGCGCGAG 3599 Query 22573 CAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCA 22632 ||| |||||||| | || ||||| || | | | ||||||| | ||||||||| Sbjct 3598 CAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGGCCTTGAGCGCGGCCCAGTCCCA 3539 Query 22633 CAGATCGGA---CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGC 22689 || |||| |||||| || | ||||||| ||||| || || | ||| ||| | Sbjct 3538 GAGGCCGGACGTCGGCGTGAC---GCCCCACATGTCGTACTGGAAGATGCCCTTGCTCAC 3482 Query 22690 CGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGC-TCGCCT 22748 || ||| ||||| | ||||||| || | | || || || || | |||| Sbjct 3481 AGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTTGCGAGCTC-CATCGAGGCCT 3423 Query 22749 CCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGC 22808 ||| ||||||| | || | ||||||||||| |||||||| | ||| ||| || ||| Sbjct 3422 CCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTCGTCGC 3363 Query 22809 TTTCGTACGGCATA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCG 22867 | || || || || | ||| | | |||||| ||||| | |||||| ||||| || ||| Sbjct 3362 TCTCAAAC-GCGTAGCCCATGAGGATGAACGCATCCGCGAGACCCTGCACGCCGATGCCG 3304 Query 22868 ATCGGTCGGTTTTTCAGATT-CGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATC 22926 ||||| |||| ||| || | | | | |||||||| | || || | || || Sbjct 3303 ATCGGGCGGTGGCGCAGGTTGCTTCGC-TCGGCCTCGGGGATCGGGTAGTAGTTGATGTC 3245 Query 22927 GATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTC 22986 ||| |||| | ||| | || || | || || || | ||||| Sbjct 3244 GATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGTCGTACAGCTTCTTGAAGTC 3185 Query 22987 GTAAACGCC----CGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATA 23042 | || | | || | || | |||||||| | ||||| || || || ||||| | Sbjct 3184 G--AAGGTCTTGTCG-TCGTTC-ACAAACTTCGACAGCGCGATGGACGCGAGGTTGCACA 3129 Query 23043 CGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTA 23102 | || |||||||| ||||||||||| | | || || || ||||| | | Sbjct 3128 CCGCGACCTCGTCGGGCGACGTGTACTCGAGCACCTCACAGCAGAGGTTGCTCGAGCGAA 3069 Query 23103 TCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACG 23162 ||||||| | || |||||| || || |||||||| |||||||| |||||||||| Sbjct 3068 TCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACG 3009 Query 23163 GCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACAC 23222 ||||||||||||||| ||||||||||| |||||| ||| | ||| ||| | | | Sbjct 3008 GCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGA-TC 2950 Query 23223 GTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCG 23281 ||| || | | ||| || |||||||| ||||||| ||| || || ||| |||| Sbjct 2949 GTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCACCC 2890 Query 23282 TAACAGTC--GGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCAT 23339 | ||| | || || |||| | |||| || | || |||||| || Sbjct 2889 CA--CGTCGTGTAGAGACCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGG 2832 Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||||||| |||| || ||||| || ||||| | |||||||| || || || |||| Sbjct 2831 CCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAATAGATCACGCGCGC 2772 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | | ||| |||||| |||||| || | || | || || || | ||| || |||| Sbjct 2771 GGTGCAGCTCGTTGCCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCC 2712 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAAC 23519 |||||||||| || | || |||| |||| | ||| ||| |||||||| || |||| Sbjct 2711 ACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCACATAAC 2652 Query 23520 GGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGC 23579 | ||||||| |||| |||| | ||||| |||||||| ||||| |||| |||| | || Sbjct 2651 GCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTTGTGC 2592 Query 23580 CCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCG 23639 | | ||| | || || | |||||| ||| || ||| ||||| ||| || Sbjct 2591 CACGGATGTACGAGTTGGTCGCGCGGATGTTGTGCACGCTGACACCGATGCCGCCGGCCC 2532 Query 23640 ATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTT 23699 | || || || ||||| || || || ||||| |||||||| ||||| ||| || | Sbjct 2531 ACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATGCCTTCGATCGAGTCGTCCT 2472 Query 23700 TGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTG 23759 | | |||| || ||| ||||| |||| |||| ||||| |||| |||||| | Sbjct 2471 TCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGAGGCGTGCCGGCGTTGAACAGCG 2412 Query 23760 TCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCAT 23819 |||| | |||||||| ||| | | | |||||| | |||||| |||| ||||| | Sbjct 2411 TCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGT 2352 Query 23820 CAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT--- 23876 | ||||| | ||| || |||| |||||||||| ||||| | || || | || Sbjct 2351 CGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGAATCATCTGCTGCGGGCGCTCAG 2292 Query 23877 CGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAAT 23936 ||||| || | ||| | | || || || | | ||| || || ||||| | Sbjct 2291 CGACCTTGCCACCG---ACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGT 2235 Query 23937 AGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAAACGGT 23984 |||| || | |||||| || ||||| | || ||||| || | |||| Sbjct 2234 AGTCGTACTCAAAGTCGCGGTCGTGGATGATCGCCGAGTTGAGGCGGT 2187 >seq957 Length=6759 Score = 214 bits (236), Expect = 2e-50 Identities = 464/683 (68%), Gaps = 10/683 (1%) Strand=Plus/Plus Query 57573 TGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCT 57632 ||| | |||||||| ||||| || || || ||||| | ||||| | ||||| Sbjct 5474 TGGCAGATGTACAAGAAGGCTGAGGCGAGCTTCTGGACGGCGGAAGAGATCGACCTCGTG 5533 Query 57633 AAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTG 57692 | || || | || ||| | ||||| || |||| | | ||||| || |||||| Sbjct 5534 CACGACCTCAAGGACTGGAACAACCTCACGGACAATGAGCGCTACTTTATCAAGCACGTG 5593 Query 57693 TTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA 57752 | ||||| ||||| || ||||| || || |||||||| | | ||| || |||| Sbjct 5594 CTCGCGTTCTTCGCGGCCAGTGATGGCATCGTCAACGAGAACCTCG-CGAT-GAACTTCA 5651 Query 57753 CAAG--AAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAA 57810 || | ||||| || | |||||| | ||||| ||||| || || | || ||||| | Sbjct 5652 GCAGCGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTACGGCTTCCAGATTGCGATTGAGA 5711 Query 57811 ACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGA 57870 || | || || || |||| ||||| |||||||| |||||| | |||||| | ||||| Sbjct 5712 ACATCCACTCGGAGGTGTACTCGCTGCTCATCGACACGTACATCAAGGACCAGACCGAGA 5771 Query 57871 AACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCC-AAGAAGGCAGAGTGG 57929 | || || ||| ||||| || || ||| | || |||||||| | ||| Sbjct 5772 AGAACCACCTTCTCCGCGCCATCGAGACGAT-CCCTTGTGTGCAGAAGAAGGCGCACTGG 5830 Query 57930 TCAATCAAATGGATAAAAA-GCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGC 57988 | |||| ||| | ||||| || || ||||||||||| | | |||||||||| Sbjct 5831 GCGCTCAAGTGGTGCGACTCGCGCCGCG-CCGCGTTCGCCGAGCGTATCGTCGCGTTCGC 5889 Query 57989 CGCCGTCGAAGGTATATTCTTTTCGGGC-AGCTTTGCGGCAATATTTTGGATGAAGAAAC 58047 || ||||| || || ||||| |||||| | | ||| | || || ||| | ||||| | Sbjct 5890 TGCTGTCGAGGGCATCTTCTTCTCGGGCTCGTTCTGC-TCTATCTTCTGGCTCAAGAAGC 5948 Query 58048 GCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCC 58107 ||||||| ||||| ||||| | || |||||| | || ||||| ||||||||||||| Sbjct 5949 GCGGCCTTATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGACGAGGGTCTCC 6008 Query 58108 ATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCA 58167 | || || |||||||| ||||||| | | | ||| || | | | ||||| Sbjct 6009 ACTGCGACTTCGCGTGCCTGCTGTACTCCAAGCTCGCCAACAAGCTCCCCGAGTCTCGCA 6068 Query 58168 TCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTAC 58227 || || || || ||| || ||||||||||| || ||||| ||| || | || | Sbjct 6069 TCCACGAGATCATTCGCGATGCTGTCGCGATCGAGAAGGAGTTCGTCCAGGACTCGCTCC 6128 Query 58228 CGGTGGCCATGCTCGGTATGAAC 58250 |||||| | ||||||||||| Sbjct 6129 CGGTGGAGCTCATCGGTATGAAC 6151 Score = 125 bits (138), Expect = 6e-24 Identities = 249/366 (68%), Gaps = 2/366 (1%) Strand=Plus/Plus Query 58029 ATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATA 58088 || || ||| | ||||| |||||||| ||||| ||||| | || |||||| | || Sbjct 6170 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATT 6229 Query 58089 TCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAAT 58148 ||||| |||||||||||||| ||||| |||||||| ||||||| | | | ||| Sbjct 6230 TCGCGTGACGAGGGTCTCCACTGCGATTTCGCGTGCCTGCTGTACTCCAAGCTCGCCAAC 6289 Query 58149 AAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208 || | | | ||||||| || || || ||| || ||||||||||| || ||| Sbjct 6290 AAGCTCCCTGAGTCTCGCATCCACGAGATCATTCGCGATGCCGTCGCGATCGAGAAGGAG 6349 Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268 || ||| || |||| ||||||| | ||||||||||| | | |||| || Sbjct 6350 TTCGTCCAGGACTCCCTCCCGGTGGAGCTCATCGGTATGAACTCGTCTCTCATGTGCCAG 6409 Query 58269 TACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCAT-TACAA 58327 ||||||||||| ||||| | || | | || || || | | || ||||| Sbjct 6410 TACATTGAGTTCTGCGCCGATCGCCTCCTCCACGCGCTTGGTGTTG-CCAAGATCTACAA 6468 Query 58328 CACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTT 58387 | || ||||| || | ||| | ||||||||||| |||||||||| ||||| || Sbjct 6469 GGTGTCGAACCCGTTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACTTCTT 6528 Query 58388 CGAAAA 58393 ||| || Sbjct 6529 CGAGAA 6534 >seq1079 Length=6315 Score = 113 bits (124), Expect = 4e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || ||||| ||||||||||| ||||| |||||||| ||||||| || || Sbjct 773 AAAGATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCC 832 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || ||||| | || | ||||| |||| || ||||||||| || | || || || Sbjct 833 TTCGGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGA 892 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||| || || ||||| ||||| ||| | || ||| Sbjct 893 TCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGAC 932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445640693875200