Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq957 158 2e-33 seq1862 118 2e-21 >seq957 Length=6759 Score = 158 bits (174), Expect = 2e-33 Identities = 380/561 (68%), Gaps = 23/561 (4%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCT-GTC 125080 ||| | |||||||| |||||| |||| ||| ||||||| |||||| |||| || || Sbjct 5474 TGGCAGATGTACAAGAAGGCTGAGGCGAGCTTCTGGACGGCGGAAGAGATCGACCTCGTG 5533 Query 125081 CAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCA 125140 || | |||| | || ||| | | | | || || | |||||| | ||||| ||| Sbjct 5534 CACG-ACCTCAAGGACTGGAACAACC---TCACGGACAATGAGCGCTACTTTATCAAGCA 5589 Query 125141 CATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT---GTTGACACG 125197 | | | || ||||| || | | ||||| ||||||||||| || || | ||| || Sbjct 5590 CGTGCTCGCGTTCTTCGCGGCCAGTGATGGCATCGTCAACGAGAACCTCGCGATGA-AC- 5647 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 ||| ||| || |||| |||| | ||||| ||||| ||||| || ||| Sbjct 5648 -TTCAGCAGCGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTACGGCTTCCAGATTGCGAT 5706 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCA 125317 ||||||| | |||||||| ||||||| || || |||| |||||| || | | | Sbjct 5707 TGAGAACATCCACTCGGAGGTGTACTCGCTGCTCATCGACACGTACATCAAGGACCAG-A 5765 Query 125318 ACGTAAA----CACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGG 125373 || || ||| | ||| ||| ||||| ||| | || | | | | || |||| Sbjct 5766 CCGAGAAGAACCACCTTCTCCG---CGCCATCGAGACGATCCCTTGTGTGCAGAAGAAGG 5822 Query 125374 CTCAATGGGTGATTCGGTGGATCGA-TGACGACAAGTCTTCGTACGCCGACAGACTGGTG 125432 | || |||| | | |||| ||| | || | | | ||| |||||| | | || Sbjct 5823 CGCACTGGGCGCTCAAGTGGTGCGACTCGCGCCGCGCCG-CGTTCGCCGAGCGTATCGTC 5881 Query 125433 GCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTTTTGGCT 125491 || ||||| || || |||||||||||||| ||||| | ||| ||| | ||||| ||||| Sbjct 5882 GCGTTCGCTGCTGTCGAGGGCATCTTCTTCTCGGGCTCGTTCTGCT-CTATCTTCTGGCT 5940 Query 125492 CAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGA 125551 |||||||||||| || ||||| || || | | |||||| | || || || ||||| Sbjct 5941 CAAGAAGCGCGGCCTTATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGACGA 6000 Query 125552 GGGCCTACACTGTGACTTTGC 125572 ||| || ||||| ||||| || Sbjct 6001 GGGTCTCCACTGCGACTTCGC 6021 >seq1862 Length=4717 Score = 118 bits (130), Expect = 2e-21 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || |||||||| | ||| | || |||||||||| |||||| | || Sbjct 3842 TACAAGACGGTGTGGGAGATCAAGCAGAAGGCTGTGCTCGATATGGCCGCCGACCGCGGC 3901 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | |||||| |||||| || ||| |||| || || | || ||||| || ||| Sbjct 3902 GCCTACATCTGCCAGAGCCAGTCGCTCAACGTGCACATCGCGGAGCCGACGATCAGCAAG 3961 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTG 98219 |||| || || ||||||||||| ||||| ||||| ||||||||||| |||||||| ||| Sbjct 3962 CTGACGTCCATGCACTTTTACGCGTGGAAGAAGGGTCTCAAGACGGGTATGTACTACCTG 4021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740850221305600