Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq957 159 4e-34 >seq957 Length=6759 Score = 159 bits (176), Expect = 4e-34 Identities = 389/585 (66%), Gaps = 7/585 (1%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| || || ||||| |||||||| ||||||||||| | || || ||||| || | Sbjct 6032 ACAGCAGGCACGCGAAGTCGCAGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGA 5973 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | |||| || ||||| ||||| ||||| || ||||| || || || ||| || || | Sbjct 5972 AGCTGAGGCCAGGCATAAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCG 5913 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG- 33474 | |||||||| || || || ||||| || || | | | ||| | | |||||| | Sbjct 5912 AGAAGAAGATGCCCTCGACAGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGC 5853 Query 33475 TCATGT--ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTA 33532 | || |||||| | ||||| | |||||||| | |||||||| ||||| || | Sbjct 5852 GCGAGTCGCACCACTTGAGCGCCCAGTGCGCCTTCTTCTGCACACAAGGGATCGTCTCGA 5793 Query 33533 TGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGAC 33592 |||| | || | ||| || || | || || | || || ||||| | || Sbjct 5792 TGGCGCGGAGAAGGTGGTTCTTCTCGGTCTGGTCCTTGATGTACGTGTCGATGAGCAGCG 5733 Query 33593 TATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCT 33652 |||| ||||| || ||||| ||||| || ||||| || |||||||| || | |||| Sbjct 5732 AGTACACCTCCGAGTGGATGTTCTCAATCGCAATCTGGAAGCCGTAGAAGCAACGCGCCT 5673 Query 33653 CGGTAATCTGTACTTCTGTACAAAATCGTTC--CGCCAAATTTTCATTCACTATTCCGTC 33710 | | || ||| || || | | || |||| ||| | || || || || || || || Sbjct 5672 CAGGAACCTGCACCTCGCTGCTGAA--GTTCATCGCGAGGTTCTCGTTGACGATGCCATC 5615 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTT 33770 |||||| || || ||||| | || || || ||||| || || | || || || Sbjct 5614 ACTGGCCGCGAAGAACGCGAGCACGTGCTTGATAAAGTAGCGCTCATTGTCCGTGAGGTT 5555 Query 33771 ATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTC 33830 ||||| || |||| || | | || | |||||| | ||||| || ||||| Sbjct 5554 GTTCCAGTCCTTGAGGTCGTGCACGAGGTCGATCTCTTCCGCCGTCCAGAAGCTCGCCTC 5495 Query 33831 TGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAA 33875 ||||| || ||||| | ||||| || | | ||||| ||||| Sbjct 5494 AGCCTTCTTGTACATCTGCCAGACCTCGTTCTCCTGGATCGGGAA 5450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622771528889600