Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1862 479 7e-130 seq217 141 2e-28 >seq1862 Length=4717 Score = 479 bits (530), Expect = 7e-130 Identities = 1199/1801 (67%), Gaps = 38/1801 (2%) Strand=Plus/Plus Query 363379 GAGTATGA-TATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGG 363437 ||||| || || ||| || | |||||| | ||||| || ||||| || || ||| Sbjct 2225 GAGTACGACTACTTT-GGCTTCAAGACGCTCGAGAAGTCGTACCTCCTGCGCGTCGGTGG 2283 Query 363438 TGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCC 363497 | | | ||| ||||||||||| ||| | |||| || ||| | || ||||| | Sbjct 2284 CAAGGTCGCTGAGCGCCCGCAGCAGATGATTCTGCGCGTCGCTGTCGGCATCCACAAGCA 2343 Query 363498 GGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGT-GCTC-GTGTATTCACGCAC 363555 || | || |||||| | || || || || | | || || | | ||||||||| Sbjct 2344 TGACATCGACGCCGCGCTCGAGACGTACGAG--TACATGTCGCAAAGCTTCTTCACGCAC 2401 Query 363556 GCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTT 363615 || ||||| || ||| ||| || || || | | || ||| |||| || ||||| || Sbjct 2402 GCGACGCCGACGCTGTTCAACGCCGGCACGCCTCGCCCGCAGCTGTCGTCGTGCTTCCTG 2461 Query 363616 CTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTT 363675 || ||||||||||| || ||||| || |||| |||||| || ||| | || || Sbjct 2462 CTCGCCATGAAGGACGACTCGATCGAAGGCATCTATGACACGCTCAAGCAGTGCGCCTGC 2521 Query 363676 ATTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGCACAGAACAG 363734 || |||||| || ||||| || ||||| | || | ||||| | || || ||| Sbjct 2522 ATCTCCAAGTGGGCCGGCGGCATCGGTGTCAGCG-TGCACAACATCCGCGCGACCAACTC 2580 Query 363735 TTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGA 363794 ||||| || |||||| || | ||||| || || || |||||||| || ||||| | Sbjct 2581 GTACATCCGTGGCACAAACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTTCAA 2640 Query 363795 CAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTA 363854 | | || ||| | || || || |||||||| || |||||||| || |||| || ||||| Sbjct 2641 CGACACGGCGCGTTATGTGGATCAGGGTGGCGGCAAGCGCAAGGGCTCGTTCGCGATGTA 2700 Query 363855 TCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAA 363914 ||||||||| || ||||| || || ||||| || || ||| ||| ||| || || Sbjct 2701 TCTCGAGCCGTGGCACGCCGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGCAA 2760 Query 363915 AGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAA 363974 ||| || || |||||||| ||||| || | ||| || | || | || ||||| Sbjct 2761 CGAGCTGCACCGCGCGCGTGATCTATTCTACGCGATGTGGATTCCCGATCTCTTCATGAA 2820 Query 363975 GCGCGTGGAGGCA---GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCT 364031 |||||| ||||| || || ||| || || ||||| |||| || ||||| Sbjct 2821 GCGCGTTGAGGCCAACGGCGAG---TGGAGCCTGTTCTGCCCGAACGAGGCGCCGGGTCT 2877 Query 364032 TTCC--GATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGA 364089 | | || || |||||||||| | | || || ||| | |||| || ||||| Sbjct 2878 CTACACGACGT--GGGGTGACGAGTTCGAGGCGCTGTACCACCAGTACGAGCGCGAGGGC 2935 Query 364090 AAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATT 364149 || || ||||| || | ||| ||| |||| ||||| || ||| | || |||||||| Sbjct 2936 CGCGCGCGCAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCGATCCTCGAGTCGCAGATC 2995 Query 364150 GAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAG 364209 ||||| || || || || ||| ||||||| || ||||||||||||||||| ||||||||| Sbjct 2996 GAGACGGGCACGCCGTACATGCTGTACAAGGACTCGTGCAACCGCAAGTCGAACCAGCAG 3055 Query 364210 CACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCC 364269 |||| || || |||| ||||||||| || ||| | | || ||||| | ||| Sbjct 3056 AACCTCGGCACGATTCGCTCGAGCAACCTCTGCTGTGAGGTGCTCGAGTACACGTCGCCC 3115 Query 364270 GACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATG-- 364327 |||||| || || || ||||| ||||| |||||||| || |||||| || || | Sbjct 3116 GACGAGGTCGCGGTGTGCAACCTCGCGTCCATCGCGCTGTCGAAGTTTGTGAACGACGAC 3175 Query 364328 -GTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGAC 364386 || || ||| | || | || || ||| | ||| | | || |||| ||| || Sbjct 3176 AAGACCTTCGACTTCAAGAAGCTGTACGACATCACCAAGGTCGTCACGCGCAACCTCAAC 3235 Query 364387 AAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCAT 364446 ||||| ||||||| || || || || || || || |||||||| || |||| || Sbjct 3236 AAGGTCATCGACATCAACTACTACCCGATCCCCGAGGCCGAGCGAAGCAACCTGCGCCAC 3295 Query 364447 CGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAG---ATG 364503 |||||||| || | || || ||||| ||||| || | | | || |||| | Sbjct 3296 CGCCCGATCGGCATCGGCGTGCAGGGTCTCGCGGATGCGT---TCATCCTCATGGGCTAC 3352 Query 364504 GCATTTGA-TTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTT 364562 || ||||| || | || || || | || || ||| | ||||| || || |||| || Sbjct 3353 GCGTTTGAGAGCGAC-GAGGCCCGCGAGCTCAACAAGAACATCTTCGAGACGCTGTACTT 3411 Query 364563 TGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGA 364622 | ||| ||| || ||| || | ||||| | || |||| | | || || Sbjct 3412 CGGCGCGATGGAGGCCTCGATGGAGCTCGCAAAGGAGCACGGCCCGTACGCCAGCTACGA 3471 Query 364623 GGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGC---CATC 364679 ||| || ||| | |||| | ||||||| || | ||| ||||||| | || Sbjct 3472 GGGCTCACCTGTGAGCAAGGGCATCTTCCAGTACGACATGTGGGGCGTCACGCCGACGTC 3531 Query 364680 TGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTC 364739 | || ||| |||||| |||| ||| ||| | || | || |||||||| Sbjct 3532 CGGCCTCTGGGACTGGGCCGCGCTCAAGGCCAGCGTCGCGCAGTACGGCGTGCGCAACTC 3591 Query 364740 CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTG 364799 || | ||||| ||||| ||||| ||||| || ||||||||||| |||||||||| Sbjct 3592 GCTGCTGCTCGCGCCGATGCCGACGGCGTCTACCGCGCAGATCCTCGGCAACAACGAGTC 3651 Query 364800 CTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGT 364859 |||| ||||| || | ||| | || ||||| || ||| | || || || || | Sbjct 3652 GATCGAGCCGTTCACGACCAACATGTACAACCGCCGCGTGCTTGCAGGCGAGTTCACGAT 3711 Query 364860 AGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAA 364919 || || |||||||| | ||||| || ||| | ||| | ||| | || Sbjct 3712 CGTGAACAAGTACCTGATGAAGGAGCTCATCGAGCTCGGCATCTGGACGCCCGAGGTGCG 3771 Query 364920 GAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCT 364979 ||| | ||| | || | || || ||||||||| | | | | || || | | Sbjct 3772 TAACCAGATCCTGCACGACCACGGCTCAGTGCAGAACGTGCGCGTGATCCCGGATGCCGT 3831 Query 364980 GAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC-GAA--CTCTCATTGATATGGC 365036 |||| | ||||| || || ||||| || || || ||| || | | |||||||| Sbjct 3832 GAAGGAGAAGTACAAGACGGTGTGGGAGAT---CAAGCAGAAGGCTGTGCTCGATATGGC 3888 Query 365037 GGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCC 365096 ||||| ||||| || | ||||| |||||||||||| | ||||| ||| | |||| Sbjct 3889 CGCCGACCGCGGCGCCTACATCTGCCAGAGCCAGTCGCTCAACGTGCACATCGCGGAGCC 3948 Query 365097 AACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 || | |||||| || |||||||| || |||| |||||| ||||| ||||| || Sbjct 3949 GACGATCAGCAAGCTGACGTCCATGCACTTTTACGCGTGGAAGAAGGGTCTCAAGACGGG 4008 Query 365157 T 365157 | Sbjct 4009 T 4009 >seq217 Length=11889 Score = 141 bits (156), Expect = 2e-28 Identities = 343/515 (67%), Gaps = 6/515 (1%) Strand=Plus/Plus Query 111360 GAAGAACTTCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAAT 111419 ||||| || |||||||| || | || ||||| || || || |||||| | || Sbjct 4153 GAAGAGCTGCTGTGGTTCATCAGTGGCGACACAAACGCCAA-GACGTTGCAGGACAAGGG 4211 Query 111420 G-TAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGA 111478 | | ||||||||||| |||||||| || | || || | ||||| | || Sbjct 4212 CATCCACATTTGGGATGGTAATGGATCCAAGGAATACCTGGAGAGCATCGGTCTCG--GA 4269 Query 111479 CAACG--AAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCA 111536 || || ||| || |||||||||||||| || || || |||||||||||||||||||| Sbjct 4270 CATCGTGAAGCTGGCGATCTCGGACCAGTGTATGGCTTCCAATGGCGCCACTTTGGTGCC 4329 Query 111537 GACTACAAAACCATGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTC 111596 | |||| |||||||||| | || | |||||| || || | | | ||| Sbjct 4330 AAGTACACGACCATGCACGCCGATTACTCTGGCCAGGGAGTCGACCAGCTGGCGGAGGTC 4389 Query 111597 ATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCA 111656 ||| | | | |||| ||||||| ||||||||| || ||| ||||||||||| Sbjct 4390 ATTCACAAGCTCAAGACGAACCCAAACGATCGTCGCATCATCATGTCGGCATGGAACCCT 4449 Query 111657 AATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACAC 111716 | | | | ||||| || || || ||||| | | |||||||| || || | Sbjct 4450 GCGGACCTCAAGGAGATGGCGCTGCCGCCGTGTCACATGTTCTGCCAGTTCTACGTCGCC 4509 Query 111717 GACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCG 111776 |||| ||| || || || ||||| ||||| || ||||| || || || || || || Sbjct 4510 AACGGCGAGCTGTCGTGTCAGATGTACCAGCGCTCAGCTGACATGGGACTCGGCGTGCCT 4569 Query 111777 TTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAA 111836 ||||| || || || ||||| || | ||| | | ||||| || | ||| || Sbjct 4570 TTTAACATCGCGAGCTACGCGCTGTTGACTCGACTCATCGCGCAGGTCACAGGGCTGCGT 4629 Query 111837 CCGGGTGAATTCATTCACGTTATCGGAGATGCGCA 111871 | || || ||||| ||| ||||| |||||||| Sbjct 4630 GCTGGAGACTTCATCCACACGATCGGCGATGCGCA 4664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302976865641920