Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1862 271 7e-68 seq1079 134 1e-26 seq5064 131 2e-25 seq4761 96.9 3e-15 seq957 82.4 7e-11 >seq1862 Length=4717 Score = 271 bits (300), Expect = 7e-68 Identities = 1140/1766 (65%), Gaps = 59/1766 (3%) Strand=Plus/Minus Query 144750 TGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAGTCGTGTATCGACG 144809 |||||| |||||||| ||||| ||||| ||| ||| | ||| ||| || |||| Sbjct 4025 TGCGCAGGTAGTACATACCCGTCTTGAGACCCTTCTTCCACGCGTAAAAGTGCATGGACG 3966 Query 144810 TCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGGCTTTGATCAATGA 144869 ||| | | ||| |||||||| | || || ||||| ||||| || ||| Sbjct 3965 TCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATGT 3906 Query 144870 AAGCGTTGCGGTCGGCGGCCATCTCAATCATA--CGTTTGCATTTCATTTCCCAAGCGGT 144927 | ||| ||||||||||||||| || | || | | | ||| || || ||||| | || Sbjct 3905 AGGCGCCGCGGTCGGCGGCCATATCGAGCACAGCCTTCTGC--TTGATCTCCCACACCGT 3848 Query 144928 CTTGTACAAACGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTGAATCGACCCCTTGT- 144986 ||||||| || | | ||||| || || | ||| | || || | || Sbjct 3847 CTTGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACGTTCTGCACTGAGCCGTGGTC 3788 Query 144987 GCGCAA-ATATGGCGTTCCGCATTTCGGACGTGTACAGTTTTAACTTGATCAAGTCGTCA 145045 | ||| || ||| || |||| |||| ||| | | | || ||| | || | Sbjct 3787 GTGCAGGATCTGG--TTACGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTC 3730 Query 145046 ATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTA 145105 || | ||||| || |||| | |||||||| || | ||| || || |||| ||| Sbjct 3729 ATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGTACATGTTG 3670 Query 145106 GACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGC 145165 | |||||| || || | |||||||| ||||| ||||| || ||||| | || || ||| Sbjct 3669 GTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTAGACGCCGTCGGC 3610 Query 145166 ATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTA 145225 || ||| | || | || ||||||| ||||| || | || | |||| |||| Sbjct 3609 ATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGGCCTTGAGCGCG 3550 Query 145226 CCCCAATCCCATAGC---GAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCC 145282 |||| ||||| || || |||||| | ||| |||||||||||||||| || |||||| Sbjct 3549 GCCCAGTCCCAGAGGCCGGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAGATGCCC 3490 Query 145283 TCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAA 145342 | ||| | || ||| | || ||| ||| || |||||||| || Sbjct 3489 TTGCTCACAGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTTGCGAGCTC-CAT 3431 Query 145343 C-TCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGC 145401 | ||||||| |||||||| || | |||||| || | | |||||||| || Sbjct 3430 CGAGGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGC 3371 Query 145402 TTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCC 145461 || |||||||| ||| || || || | || ||||| ||||| ||||| | || Sbjct 3370 CTCGTCGCTCTCAAACGCGTAGCCCATGAGGATGAACGCATCCGCGAGACCCTGCACGCC 3311 Query 145462 CACGCCGATGGGCCGATGTTTCATGTTGCTCATC-CTCGCCGACTC---GATAGGATATC 145517 | |||||| || || || || |||||| || |||| | ||| ||| || || Sbjct 3310 GATGCCGATCGGGCGGTGGCGCAGGTTGCT--TCGCTCG--GCCTCGGGGATCGGGTAGT 3255 Query 145518 GATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACT 145577 || |||||| | || || | ||| ||| || ||||| || |||| || || Sbjct 3254 AGTTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGTCGTACAGCT 3195 Query 145578 TTTCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGAC--GGCGATCGACGC 145635 | | ||||| || | || ||| || |||| | || | ||| ||||| ||||| Sbjct 3194 TCTTGAAGTCGAA---GGTCTTGTCGTCGTTCACA-AACT-TCGACAGCGCGATGGACGC 3140 Query 145636 CAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAAT 145694 | || || || || ||| || |||| || |||| | | | ||| ||| | | Sbjct 3139 GAGGTTGCACACCGCGACCTCGTCGGGCGACG-TGTACTCGAGCACCTCACAGCAGAGGT 3081 Query 145695 TGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGT 145754 |||| | || || || || || ||||| || || | |||||||| |||||||| Sbjct 3080 TGCTCGAGCGAATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGT 3021 Query 145755 AGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT---AAAACGGTGCAAGT 145811 | ||||||||||| ||| ||||| | ||||| ||| | ||| || | | || | Sbjct 3020 ACAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGC---T 2964 Query 145812 CCTGCGCACGCACCTGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCT 145871 |||||| || | | || | ||||||||| ||||| | ||| ||| ||| Sbjct 2963 GCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCT 2904 Query 145872 CAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACC 145931 | ||| || ||| | | | || || || || ||| || || | ||| || Sbjct 2903 CGAACTCGTCACCCCACGTCGTGTAGAGACCCGGCGCCTCGTTCGGGCAGAACAGGCTCC 2844 Query 145932 ATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCA 145991 | |||||||||| | ||||||| ||| || | ||| || | ||||| |||||| | | Sbjct 2843 ACTCGCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAATA 2784 Query 145992 AGT--CGCGCGCTTTGCAATCCTCAGCACCCATGTTTC-GCTTCAAATTAAGCACACT-A 146047 | ||||||| |||| ||| | || || ||| ||| | | || | ||| Sbjct 2783 GATCACGCGCGCGGTGCA--GCTC-GTTGCCGTGGTTCTTCTTGAGGTCGAGGA-ACTCG 2728 Query 146048 TAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCA 146104 ||||||| ||||||||||| || | ||| | |||| | || || || || |||| Sbjct 2727 AAGATGTCGGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCA 2668 Query 146105 CCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTG 146164 ||||| ||||| | ||| || ||| ||| || ||||||| ||||||| ||| |||| | Sbjct 2667 CCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTC 2608 Query 146165 GCTACGCCGTTCGT--AGAGTTTATTCTGGT--GCCGCGGGAGCGCACGCAATGAACATT 146220 | |||||| || | | | | || | ||| ||| | | || || | Sbjct 2607 GACGAGCCGTTTGTGCCACGGATGTACGAGTTGGTCGC----GCGGATGTTGTGCACGCT 2552 Query 146221 CACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGAT 146280 || |||| |||||| | ||||||| || |||||| | |||||| || ||||| Sbjct 2551 GACACCGATGCCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGAT 2492 Query 146281 GCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATC 146338 ||| || || ||| |||| ||| ||||||| |||||||| ||| ||||| Sbjct 2491 GCCTTCGATCGAGTCGTCCTTC--ATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGA 2434 Query 146339 GGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCATCATC 146398 ||||| || || ||||| |||||| |||||||||| || | || | ||| | Sbjct 2433 GGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTAC 2374 Query 146399 CGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATG 146458 ||||| |||| ||| | | ||||| | || ||||| | ||||||||||| Sbjct 2373 TCGTACGTCTCGAGCGCGGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGA 2314 Query 146459 AGCATGTGTTGGGGCCGCTCCGCCAC 146484 | ||| || || || ||||| || || Sbjct 2313 ATCATCTGCTGCGGGCGCTCAGCGAC 2288 >seq1079 Length=6315 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || ||||| | || | ||||||||||| || |||||||| || Sbjct 1003 CCACCACGAAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 944 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||| ||||||||| Sbjct 943 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGG 884 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| |||||||||| | || | | || | | ||||| | Sbjct 883 ATTCCCTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACG 824 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | || || ||||| ||||| || ||||| |||||||| Sbjct 823 TCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 777 >seq5064 Length=2045 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 ||||||||||| || |||||||| || | ||||| |||||| ||||||||||| Sbjct 6 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 65 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| | |||||||| |||||||||||||| || ||||| ||| ||||||||| Sbjct 66 GCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTCTGCTTG 125 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | |||| | || ||||| ||| | ||| | || || || || || || Sbjct 126 ACATTGTCAATGCTATCCGAGGGCTCGACGTCCAGGGTGATCGTCTTCCCCGTGAGGGTC 185 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 186 TTCACGAAGATCTGCAT 202 >seq4761 Length=2180 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| || ||||| | || | ||||||||||| || |||||||| || Sbjct 1531 CCACCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAA 1590 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | |||||||| ||||||||| Sbjct 1591 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGG 1650 Query 131128 ATTCCT 131133 |||||| Sbjct 1651 ATTCCT 1656 >seq957 Length=6759 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACA---GCAGCACC 46140 || || || |||| ||||| | |||||||| | |||||| | || || || || Sbjct 5801 ATCCCTTGTGTGCAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACTCGCGCCGCGCC 5860 Query 46141 GCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGC 46200 ||| |||||||||||||| || || || || ||| |||||| |||| || || ||| Sbjct 5861 GCG---TTCGCCGAGCGTATCGTCGCGTTCGCTGCTGTCGAGGGCATCTTCTTCTCGGGC 5917 Query 46201 -AGTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAG 46259 ||| || | | ||||| | |||| | ||| | ||||| ||||| | || Sbjct 5918 TCGTTCTG-CTCTATCTTCTGGCTCAAGAAGCGCGGCCTTATGCCTGGCCTCAGCTTCTC 5976 Query 46260 CAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT 46310 |||||||| || ||||| |||||||| || || ||||| ||||| || Sbjct 5977 GAACGAGCTCATCTCGCGTGACGAGGGTCTCCACTGCGACTTCGCGTGCCT 6027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471879692390400