Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq125 104 3e-17 seq836 98.7 1e-15 seq6758 89.7 6e-13 seq4313 82.4 9e-11 >seq125 Length=14182 Score = 104 bits (114), Expect = 3e-17 Identities = 178/257 (69%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 15398 ATATTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCAC 15457 || || || || ||||||| ||| || || ||||| || ||||| | |||||||| ||| Sbjct 2359 ATCTTCATCGGTCCGACGTTCTACCAGCGTCTCAAGCATATGGTCGACGACAAGATCCAC 2300 Query 15458 GCGCGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAA 15517 |||| |||| ||| | ||||||| ||| |||||||||| ||||| ||| | Sbjct 2299 TCGCGCTCGCGCGGCCCCGTGACGATGCTGACGCGCCAGCCCATGGAGGGTCGTGCGCGA 2240 Query 15518 GGCGGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGT---GCACGGCGCC 15574 | ||||| || || | ||||||||||| ||||| |||| | ||||||| | Sbjct 2239 GAAGGTGGTCTGCGTATGGGAGAGATGGAGCGCGACTG---TCTGATCTCGCACGGCTCG 2183 Query 15575 ACCCAATTCCTCAACGAGCGCATGTTTCTCAACAGTGACCCGTTCCAGATTGACGTGTGC 15634 || | ||||||| || ||| |||| |||| ||| ||| | | |||||||| Sbjct 2182 GCCAACTTCCTCATGGACCGCCTGTTCGCCAACTCGGACGCGTATCGCGTGCACGTGTGC 2123 Query 15635 AAAGACTGCGGCATGAT 15651 | ||||||||| || Sbjct 2122 GACATCTGCGGCATCAT 2106 >seq836 Length=7233 Score = 98.7 bits (108), Expect = 1e-15 Identities = 246/363 (68%), Gaps = 22/363 (6%) Strand=Plus/Plus Query 126034 GACCAGCCGGTCCCAATGCCGACCGACCCGTTGACCAGCACCAGCGGAATGATGGGCAC- 126092 |||||||| || |||||||| | | ||||||| ||||| || ||| | ||| ||||| Sbjct 1454 GACCAGCCTGTGCCAATGCCTTCTGCGCCGTTGATCAGCAGCATCGGCAGGATCGGCACG 1513 Query 126093 --AAAGTGG------ACCGGCTCACCCTC--CGAGCTCT--GCTCCAAGATGGGGTCGTC 126140 | ||||| || || | || || || | | |||| | | | |||||| Sbjct 1514 TAATAGTGGGGCTCCACTGGGTACCCATCGTCGTCCACGTAGCTC-AGCAGCGCGTCGTC 1572 Query 126141 CTCCTCGCGGAAAATGTAGG---GTAGAATCTTGTGCGGTTTGGTGTAAATGTAGCGGGG 126197 ||||| ||||| | ||| || | || || ||| | ||| | || ||||| || Sbjct 1573 GTCCTCT-GGAAACAGCAGGCGCGT-GTAT-TTCTGCAGCAAAGTGAAGATATAGCGCGG 1629 Query 126198 AGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACTGACCGTCCGGCTCCAACAA 126257 | || | |||||||| |||| || |||||||||||||| || ||| | || ||| Sbjct 1630 ACTCGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGTCCCGACGGATACAGCAA 1689 Query 126258 CTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGACAATGGTCTCGCACAGGTT 126317 ||| ||||| || || ||| |||||||||| | |||||||| ||| | ||| Sbjct 1690 TGGCAGGTTGTTAGCACCGACATAGTCCTGCGCCATGTTGACAATCGTCGAGTGCAGCGA 1749 Query 126318 CTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCAC-GTAGCCGCTCAGCTGCGCAACCT 126376 | ||||||||| | ||| | || ||||| || || ||| || |||||||| |||| Sbjct 1750 CGCCTCGCCGTGGTGGTACGCAGTGTGCTC-GCTACAGTAACCAGCGAGCTGCGCGACCT 1808 Query 126377 TGA 126379 ||| Sbjct 1809 TGA 1811 >seq6758 Length=1450 Score = 89.7 bits (98), Expect = 6e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 126187 ATGTAGCGGGGAGCTGCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAACTGACCGTCC 126246 ||||| || || | ||| | ||| || || ||| | | || || ||||||||||||| Sbjct 1216 ATGTAACGAGGCGATGCTGCATCTTTACCACCCGCTAGTCGAGTACCAAACTGACCGTTT 1275 Query 126247 GGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTTGACAATGGTC 126306 || ||||| || | |||||| ||||||||| || || || | |||| ||| || Sbjct 1276 GGAGACAACAGATGGATGTTGTTGCTTCCCACAAAATCTTGGGCCATGTTGATAATCGTG 1335 Query 126307 TCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTAGCCGCTCAGC 126366 || || |||| || ||||| | ||| | | ||||||| |||||| || | ||| Sbjct 1336 CCGTTGAGACTCTGTTCACCGTGGTGGTACGCAGAATGCTCGGACACGTATCCACCAAGC 1395 Query 126367 TGCGCAACCTTGAT 126380 || |||||||| || Sbjct 1396 TGAGCAACCTTAAT 1409 >seq4313 Length=2415 Score = 82.4 bits (90), Expect = 9e-11 Identities = 128/178 (72%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 15020 GTAAAGGTTGTCATTGGCCAGATGCGCACGCCCGAGATTGGCGACAAGTTTTGCTCT-GG 15078 || ||||| |||| |||||| ||| ||||||||| ||||||||||| || | | Sbjct 1555 GTCAAGGTGCTCATCCGCCAGACGCGTCGGCCCGAGATCGGCGACAAGTTCAGCAGTCGC 1614 Query 15079 TATGGCGCAAAAGGGCACGTGCGGCATGATTTTCCCCCAGGAAGACATGCCCTTTACCG- 15137 | ||| || |||||| |||||||| ||| | |||||| |||||||| || | || Sbjct 1615 CACGGC-CAGAAGGGCGTGTGCGGCACGATCCGCAACCAGGAGGACATGCCGTTCAACGA 1673 Query 15138 CGTCAGGCATGACGCCCGACATTATCATCAACCCCAACTGCATCCCGTCCCGCATGAC 15195 || | ||| || || ||| | ||||| ||||| || | ||||| ||||||||| Sbjct 1674 CGAC-GGCGTGTGCCCGGACCTGATCATGAACCCGCACGGTTTCCCGAGCCGCATGAC 1730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611219587456000