Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq17 185 2e-41 seq957 140 7e-28 seq6758 131 3e-25 >seq17 Length=23322 Score = 185 bits (204), Expect = 2e-41 Identities = 450/673 (67%), Gaps = 18/673 (3%) Strand=Plus/Plus Query 279691 TGCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTC 279750 |||| || ||| | || || |||||||||||||||||||| | | | || ||||| | Sbjct 13514 TGCCTGTCGGTGCCCTCTCTGGTGGTTGGAAGATGAAGCTCGAGTTGGCCCGTGCCATGC 13573 Query 279751 TACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACG 279810 | || || ||| |||| || ||||||||||| || |||||| |||| ||||| Sbjct 13574 TCATGAAGGCTGATATCCTCCTTCTTGATGAGCCGACGAACCACTTGGATGTGCACAACG 13633 Query 279811 TAGCCTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTC 279870 | ||||| | | |||||| || || || | ||| || | || ||||| || || | Sbjct 13634 TCAAGTGGCTCGAGGACTACCTCACGAGCCTCACGAACGTGACGTCGCTCATCGTGTCGC 13693 Query 279871 ACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGA 279930 |||||||||| ||||| || | || ||| | |||||| ||||| ||| || | | Sbjct 13694 ACGACTCTGGTTTCCTCGACACGGTCTGCACGAACATCATCCACTACGAG---AACCGTA 13750 Query 279931 AGCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAA--AGCGCCCTGAGGCGGC 279988 ||||| | | ||| || ||||| || | ||||| ||| || || ||||| Sbjct 13751 AGCTCAAGACGTACAAGGGTAACCTCTCCGAGTTCGT--CAAGCAGAAGCCGGAGGCCAA 13808 Query 279989 CGCCTACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCT 280048 | ||||| || || ||| ||| || ||||| || |||||||| || || || Sbjct 13809 GACGTACTACGAGCTTGAGGCCGCTGCCTTCAAGTTCACGTTTCCTGAGCCGGGTTTCCT 13868 Query 280049 GGAGGGCATCAC-ATCAAAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTT 280107 | | |||| | ||| || || | ||||| ||| | ||| | | Sbjct 13869 TGCTGATATCAAGAACAAGGGTAAGC-CGATCATTCGTCTCACGAACTGCTCGTACCAGT 13927 Query 280108 ATCCCAATGGCCCCAACAT--CTTC-AGCAGTG---TCAACTCGCAGGTTTCTATGAACT 280161 | || ||||| | ||| | || | | ||| ||||| | | ||| || || Sbjct 13928 ACCC---TGGCCGCGACAAGCCGTCGATCCGTGACATCAACGTGACGTGTTCGCTGGCCT 13984 Query 280162 CACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGA 280221 | || |||| || || || || || ||||| |||||||| || || ||||| | |||| Sbjct 13985 CGCGTATTGCCGTTATCGGCCCGAACGGTGCCGGTAAGTCGACGCTCATCAAGATGCTGA 14044 Query 280222 CTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTT 280281 | || ||| | || | || | || | || |||||||| || |||||| | || | Sbjct 14045 CGGGTGAGGTCGAGCCTACGGTCGGTACGGTGTGGAAGCACCCGGCCATGCGTTTCGCCT 14104 Query 280282 ACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAAT 280341 |||| || |||||||||||||||||||| ||| | ||||| ||||| || | ||||| | Sbjct 14105 ACGTTGCCCAGCACGCTTTCCACCACATTGAGGAGCACCTCGACATTACGGCCAACCAGT 14164 Query 280342 ACATTCAGTGGCG 280354 |||| |||||||| Sbjct 14165 ACATCCAGTGGCG 14177 Score = 111 bits (122), Expect = 3e-19 Identities = 126/168 (75%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 279350 GGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAACTCTAC 279409 |||||| || |||| || ||||||||||| || ||||| | ||||||||| ||| | Sbjct 13176 GGATCTCTGCAACTGCGAGTTCTCGCTCGCGTACGGTGGTATGATTCTGCTGAACAACGC 13235 Query 279410 CCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCGGGTAA 279469 ||| ||| | ||||||||||| |||| || |||||| ||| || || || ||||| Sbjct 13236 CCGTCTCCGCCTCAAGCGTGGCCACCGTTACGGTCTCTGCGGCCCGAACGGTTGCGGTAA 13295 Query 279470 GAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCC 279517 | || || ||||||||||| | ||||| ||||| | ||| ||||| Sbjct 13296 GTCGACGCTTATGCGCGCCATCTCGAACGGCCAGCTCG-AGGGTTTCC 13342 >seq957 Length=6759 Score = 140 bits (154), Expect = 7e-28 Identities = 388/585 (66%), Gaps = 20/585 (3%) Strand=Plus/Minus Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTG--GTGCAGACCCTCG 251856 |||||||| | ||||| |||||||| || | ||| || || | ||| ||||||||| Sbjct 6054 AGCTTGTTGGCGAGCTTGGAGTACAGCAGGCACGCGAA---GTCGCAGTGGAGACCCTCG 5998 Query 251857 TCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGC 251916 || || ||||| |||||| || | | ||||||||||| | || || ||| ||||| Sbjct 5997 TCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATAAGGCCGCGCTTCTTGAGC 5938 Query 251917 CAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACA 251976 |||||||| | ||| || || || ||||| | | ||||||||| | | || || Sbjct 5937 CAGAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCGACAGCAGCGAACGCGACG 5878 Query 251977 AGGCGCTCAGCAAACGACTTGTCCTGCGA---CAAGAACTTCTGTGCCCA-TGCTGCCTT 252032 | ||||| || |||| | |||| | |||| | ||||| ||| ||||| Sbjct 5877 ATACGCTCGGCGAACGCGGCGCGGCGCGAGTCGCACCACTTGAGCGCCCAGTGC-GCCTT 5819 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTC 252092 ||| || ||||| || ||||| || | || |||| ||||| | ||| Sbjct 5818 CTTCTGCACACAAGGGATCGTCTCGATGGCGCGGAGAAGGTGGTTCTTCTCGGTCTGGTC 5759 Query 252093 CTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACAT 252152 || |||| || || | || || ||||||| |||||| |||||| || | || Sbjct 5758 CTTGATGTACGTGTCGATGAGCAGCGAGTACACCTCCGAGTGGATGTTCTCAATCGCAAT 5699 Query 252153 CTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGC 252212 |||| | | ||||| |||||| ||| | || || || ||||| | || Sbjct 5698 CTGGAAGCCGTAGAAGCAACGCGCCTCAGGAACCTGCACCTCGCTGCTGAAGTTCATCGC 5639 Query 252213 AATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAA 252272 | |||||| | || |||||||| ||| | || ||||| | || | | |||||| || Sbjct 5638 GAGGTTCTCGTTGACGATGCCATCACTGGCCGCGAAGAACGCGAGCACGTGCTTGATAAA 5579 Query 252273 GTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCA-GAGG-- 252329 || ||||||| ||| |||| |||| |||||| | ||| || || |||| Sbjct 5578 GTAGCGCTCATTGTCCGTGAGGTTGT---TCCAGTCCTTGAGGTCGTG---CACGAGGTC 5525 Query 252330 AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 | |||||| |||||||||| | | | | |||||||||||||| Sbjct 5524 GATCTCTTCCGCCGTCCAGAAGCTCGCCTCAGCCTTCTTGTACAT 5480 >seq6758 Length=1450 Score = 131 bits (144), Expect = 3e-25 Identities = 245/359 (68%), Gaps = 1/359 (0%) Strand=Plus/Minus Query 218650 GAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGT 218709 ||||||||||| |||||| || ||| || || ||||| ||||| ||||| |||||| Sbjct 1412 GAAATTAAGGTTGCTCAGCTTGGTGGATACGTGTCCGAGCATTCTGCGTACCACCACGGT 1353 Query 218710 GAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAAC 218769 || |||||||| | || | ||| | |||||| || || | |||||| || |||||| Sbjct 1352 GAACAGAGTCTCAACGGCACGATTATCAACATGGCCCAAGATTTTGTGGGAAGCAACAAC 1293 Query 218770 ATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGT 218829 || | || || || ||||||||||||||| |||| ||| |||||| || ||| Sbjct 1292 ATCCATCTGTTGTCTCCAAACGGTCAGTTTGGTACTCGACTAGCGGGTGGTAAAGATGCA 1233 Query 218830 GCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAG 218889 || || | | || |||||||| || | || | || || | | ||| | | Sbjct 1232 GCATCGCCTCGTTACATCTTTACGAACCTCGAGCAACTCACACGACGCATCTTCGACCCT 1173 Query 218890 GCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGATTGAGCCCGAGTGG 218949 ||| | | | | | ||||| || || ||||| ||||||||||| || ||| Sbjct 1172 CTGGATAACGACAACTTGACATATCTCGACGATGATGGACAGTCGATTGAGCCTGAATGG 1113 Query 218950 TATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGGTT 219008 ||||| || ||||| | ||||| ||||||| | | |||||||| || ||||| Sbjct 1112 TATGTTCCGATCATTCCAATGGCACTCGTCAATGGTGGCGAGGGTATCGGCAC-GGGTT 1055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027539703772960