Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1862 508 1e-138 seq957 284 2e-71 >seq1862 Length=4717 Score = 508 bits (562), Expect = 1e-138 Identities = 1370/2064 (66%), Gaps = 75/2064 (4%) Strand=Plus/Minus Query 243775 CAGGTAGTACATGCCGGTCTTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAG 243834 |||||||||||| || |||||||| || | ||| |||| | |||||||| |||||| Sbjct 4021 CAGGTAGTACATACCCGTCTTGAGACCCTTCTTCCACGCGTAAAAGTGCATGGACGTCAG 3962 Query 243835 CTTCTTCATCTTGAGCTTTGGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTG 243894 ||| | ||| | ||| | | || |||| |||||| ||||||||||| Sbjct 3961 CTTGCTGATCGTCGGCTCCGCGATGT----GCAC--------GTTGAGCGACTGGCTCTG 3914 Query 243895 GTCGACGAAGGGCGCC-CGCTCTGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCAT 243953 | || | ||| |||| || || |||||||| || | ||||||| ||||| Sbjct 3913 GCAGATGTAGG-CGCCGCGGTCGGCGGCCATATCGAGCACAGCCTTCTGCTTGATCTCCC 3855 Query 243954 ACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGC 244013 || |||||||||| | ||| | | || |||| | | | ||||||||| |||| Sbjct 3854 ACACCGTCTTGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACGTTCTGCACTGAGC 3795 Query 244014 CCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCA--- 244070 | | || | | || |||| | |||| | |||| | ||| | |||| | Sbjct 3794 CGTGGTCGTGCAGGATCTGGTTACGCACCTCGGGCGTCCAGATGCCGA---GCTCGATGA 3738 Query 244071 GCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGT 244130 || ||| | ||||| | ||||||| | | ||||| || | ||||||||||| | || Sbjct 3737 GCTCCTTCATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGT 3678 Query 244131 AGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCG 244190 | | |||| | ||| ||||||||| ||| ||||||| || |||||||| || || Sbjct 3677 ACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTAGACG 3618 Query 244191 CAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC 244250 | |||||||| |||| | |||||| ||| | |||||||| | | || || | Sbjct 3617 CCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGGCCT 3558 Query 244251 TGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAA 244310 ||||| || ||||||||| | ||| || ||| || ||| |||||||||||| Sbjct 3557 TGAGCGCGGCCCAGTCCCAGAGGCCGGAC--GTCGGCG----TGACGCCCCACATGTCGT 3504 Query 244311 ACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCT 244370 |||| | | |||||||| || || |||||||||| | | ||| || |||| || Sbjct 3503 ACTGGAAGATGCCCTTGCTCACAGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCT 3444 Query 244371 GGGCCAGCTTACAGCTCT-CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTG 244429 || |||| || | | || | ||| || |||| | ||||||||||| ||||| Sbjct 3443 TTGCGAGCTC-CATCGAGGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTG 3385 Query 244430 TTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCC 244489 || | |||||||||| | ||| || | | |||||| | ||||| | || || Sbjct 3384 TTGAGCTCGCGGGCCTCGTCGCTCTCAAACGCGTAGCCCATGAGGATGAACGCATCCGCG 3325 Query 244490 AGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGC 244549 || |||||||||||||||||||| || | ||| ||| |||| ||| ||| ||||| Sbjct 3324 AGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGCTTCGCTCGGCCTCGGGG 3265 Query 244550 ACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACG 244609 | ||||| ||||| |||||| ||||||||||||||||| |||| | | || | Sbjct 3264 ATCGGGTAGTAGTTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATG 3205 Query 244610 TCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAAC 244669 ||| |||| || |||||| | || || | || | || |||||||| Sbjct 3204 TCGTACAGCTTCTTGAAGTCGAAG--GT-------CTTGTCG-TCGT-----TCACAAAC 3160 Query 244670 TCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGG 244729 | || |||| | || |||||||| || || ||||| || | ||||||| | Sbjct 3159 TTCGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGACGTGTACTCG 3100 Query 244730 ACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTG 244789 | | ||| ||||||||| || | || ||||| |||| ||| || || |||||| Sbjct 3099 AGCACCTCACAGCAGAGGTTGCTCGAGCGAATCGTGCCGAGGTTCTGCTGGTTCGACTTG 3040 Query 244790 GCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGG 244849 |||||| | ||||||||| |||||| | ||| || ||||||| ||| | ||||| Sbjct 3039 CGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGG 2980 Query 244850 A-CGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTA 244908 | ||| | |||||| | | || || |||| |||| || |||||| |||||| Sbjct 2979 ATCGC-GAACCAGAGCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTA 2921 Query 244909 GCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAG-GCCGGGGCACGACG 244967 || |||||| |||||||||||| |||| || |||| ||| | | ||| | || Sbjct 2920 CTGGTGGTACAGCGCCTCGAACTCGTCACCCC--ACGTCGTGTAGAGACCCGGCGCCTCG 2863 Query 244968 -CCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGG 245026 |||||| | || |||||||||||| | ||| || | || ||||||||| ||||| Sbjct 2862 TTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGA 2803 Query 245027 ATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTC 245086 ||||| | || | ||| || || | | | ||| || ||| ||||||| | Sbjct 2802 ATCCACATCGCGTAGAATAGATCACGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTCTTG 2743 Query 245087 AGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCG 245146 || || | || || |||| |||| ||||||| ||||| | || | |||| | ||| Sbjct 2742 AGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCC 2683 Query 245147 GGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTA 245206 |||||| ||| ||||| ||||| | | | ||||||| | |||||| | Sbjct 2682 TTGCGCTTGCCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATG 2623 Query 245207 GGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGG 245266 ||||| | |||||| || |||||| ||||| |||||| | | | | | || | Sbjct 2622 GGCACGAGGCCGTTCGACGAGCCGTTTGTGCCACGGATGTACGAGTTGGTCGCGCGGATG 2563 Query 245267 TTGCTGATG--GACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGA 245324 ||| | | |||| || | |||||||| |||||||||| |||||| ||||| Sbjct 2562 TTGTGCACGCTGACA--CCGATGCCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGA 2505 Query 245325 TGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACA 245384 ||||| ||||| || || ||| ||||||| |||||| ||||| || |||| Sbjct 2504 GCGTGTCATAGATGCCTTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACA 2445 Query 245385 GCTG-GGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGG 245443 |||| |||| || | ||| | ||||||||| || || | ||||| || ||| ||| Sbjct 2444 GCTGCGGGCGAGGCG-TGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTT 2386 Query 245444 CTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT--CTGCA 245501 ||| | | || ||||||||| |||| |||||||||| | |||||| | || Sbjct 2385 TGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCATGCTTGTGGATGCCGACA 2326 Query 245502 G-GGCGCACCTCATGAGGGTGTGCTG-GGGCG-TC-TCGATGGGTCCCTCGGGTCCCTTG 245557 | | ||| | || | | ||||| ||||| || ||| || || | | Sbjct 2325 GCGACGCGCAGAATCA---TCTGCTGCGGGCGCTCAGCGACCTTGCCACCGACGCGC--- 2272 Query 245558 AGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGG 245617 || | ||| || ||||||||||||||| |||||||| ||| |||||||| || | Sbjct 2271 AGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCAAAGTCGCGGTCG 2212 Query 245618 TGCCTGACGGCTGCGTCGAGTCTCTCGGCGTGCTTC-TGACTGACCTCGTAAAACTTTTG 245676 || ||| || | || ||| | || ||||| | ||| ||| || ||| | | | Sbjct 2211 TGGATGATCGCCGAGTTGAGGCGGTCCTTGTGCTCCATGA-TGATCTGGTAGACGTCCTC 2153 Query 245677 CGCTATGAGGGGAGCCCTGAGCCCGG---TGTCCGGATTGACGTTGAACCAGAGCCTCTT 245733 ||| || || || ||| || |||| | || | ||| | | | ||||| | Sbjct 2152 CGCGATCAGCGGCGCCGGCAGACCGGTCTTCTCGTGCTTGTTCTGGTAGAAGAGCTCAAT 2093 Query 245734 GCACACCTCCGAGAACTTGGGGCTGGTGAGCTTATGCAGGTTGGTGACTGCTATGCGCGC 245793 | |||||||||| | ||||| ||| |||||||| | || | |||||||| Sbjct 2092 G---TTCTCCGAGAACAGCTTGTTGGTGTTCTTGTGCAGGTTCGAGATCGAGATGCGCGC 2036 Query 245794 CGCCAACTTGCTGTAGTCGGGGTG 245817 ||| | |||||| |||||||||| Sbjct 2035 CGCGAGCTTGCTAAAGTCGGGGTG 2012 >seq957 Length=6759 Score = 284 bits (314), Expect = 2e-71 Identities = 409/575 (71%), Gaps = 9/575 (2%) Strand=Plus/Plus Query 42412 TCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCA 42471 |||| || | || || |||||||| ||| ||| ||||| ||||| |||||||| || | Sbjct 5583 TCAAGCACGTGCTCGCGTTCTTCGCGGCCAGTGATGGCATCGTCAACGAGAACCTCGCGA 5642 Query 42472 CCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAG 42531 | |||| | ||||||||| ||||||||| |||||||||||||||||||| | Sbjct 5643 TGAACTTCAGCAGCGAGGTGCAGGTTCCTGAGGCGCGTTGCTTCTACGGCTTCCAGATTG 5702 Query 42532 CCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGG 42588 | || |||||| | ||||| ||||||||| | ||||||| ||||||||||| || Sbjct 5703 CGATTGAGAACATCCACTCGGAGGTGTACTCG---CTGCTCATCGACACGTACATCAAGG 5759 Query 42589 ATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGA 42648 | | |||| ||| || || ||||| |||||||| || || | |||||| Sbjct 5760 ACCAGACCGAGAAGAACCACCTTCTCCGCGCCATCGAGACGATCCCTTGTGTGCAGAAGA 5819 Query 42649 AGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGG 42708 ||||| ||||||||||||| ||| ||| | | ||| |||||| |||| | | | Sbjct 5820 AGGCGCACTGGGCGCTCAAGTGGTGCGACTCGCGCCGCGCCGCGTTCGCCGAGCGTATCG 5879 Query 42709 TAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGC 42768 | || || | || |||||||||||||||||||||||| | ||| ||| |||||||||| Sbjct 5880 TCGCGTTCGCTGCTGTCGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCTATCTTCTGGC 5939 Query 42769 TCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACG 42828 ||||| || | ||||| || |||| |||||||||||| |||||| | |||| Sbjct 5940 TCAAGAAGCGCGGCCTTATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGACG 5999 Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 |||| || || | ||||| || ||||| |||| ||| | | ||| |||||| | Sbjct 6000 AGGGTCTCCACTGCGACTTCGCGTGCCTGCTGTACTC---CAAGCTCGCCAACAAGCTCC 6056 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 | || || ||| | ||||| || || || | |||||||||||||||| || Sbjct 6057 CCGAGTCTCGCATCCACGAGATCATTCGCGATGCTGTCGCGATCGAGAAGGAGTTCGTCC 6116 Query 42949 CGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAAC 42983 | | ||||| || ||| || |||| |||||| Sbjct 6117 AGGACTCGCTCCCGGTGGAGCTCATCGGTATGAAC 6151 Score = 152 bits (168), Expect = 1e-31 Identities = 269/386 (70%), Gaps = 7/386 (2%) Strand=Plus/Plus Query 42759 ATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 ||||||||||||||| || || || ||||| || |||| |||||||||||| ||||| Sbjct 6170 ATCTTCTGGCTCAAGAAGCGCGGCCTC-ATGCCTGGCCTCAGCTTCTCGAACGAGCTCAT 6228 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAG 42877 | |||||||| || || | || || || ||||| |||| ||| | | | || Sbjct 6229 TTCGCGTGACGAGGGTCTCCACTGCGATTTCGCGTGCCTGCTGTACTCCAAGCTCGCCA- 6287 Query 42878 GCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAA 42937 |||||| | | || || ||| | ||||| || ||||| | ||||||||| Sbjct 6288 --ACAAGCTCCCTGAGTCTCGCATCCACGAGATCATTCGCGATGCCGTCGCGATCGAGAA 6345 Query 42938 GGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGAC-CTCATGT 42996 ||||||| || | | || || || ||| || |||| |||||| || | ||||||| Sbjct 6346 GGAGTTCGTCCAGGACTCCCTCCCGGTGGAGCTCATCGGTATGAACT-CGTCTCTCATGT 6404 Query 42997 GCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCT 43056 || ||||||| ||| | |||||| | ||||| | | | ||| | | ||| Sbjct 6405 GCCAGTACATTGAGTTCTGCGCCGATCGCCTCCTCCACGCGCTTGGTGTTGCCAAGATCT 6464 Query 43057 ACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACT 43116 |||| | || ||| ||||||| ||||| | |||||| | ||||||||||||||| Sbjct 6465 ACAAGGTGTCGAACCCGTTCGACTGGATGGACATGATCTCGCTCCAGGGCAAGACCAACT 6524 Query 43117 TTTTCGAGAAGCGCGTCGCCGACTAC 43142 | |||||||||||||| | ||| ||| Sbjct 6525 TCTTCGAGAAGCGCGTGGGCGAGTAC 6550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944072896345600