Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1862 248 1e-60 seq957 176 5e-39 >seq1862 Length=4717 Score = 248 bits (274), Expect = 1e-60 Identities = 1184/1849 (64%), Gaps = 81/1849 (4%) Strand=Plus/Minus Query 113580 TCGCCTTGGCCTTTGATCGG------AGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCC 113633 |||| | |||||| | |||| ||||||||||| ||||||||||| |||| ||||| Sbjct 4046 TCGCATCGGCCTTCGGTCGGCTGCGCAGGTAGTACATACCCGTCTTGAGACCCTTCTTCC 3987 Query 113634 AGGCATACATATGCATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCA 113693 | || || | ||||| || | || |||| || || || | ||| | ||| | Sbjct 3986 ACGCGTAAAAGTGCATGGACGTCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGA 3927 Query 113694 TACTTTGGGATTGATCGATGAAGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCA 113753 ||| || |||| || || || || || |||||||| | |||| ||||| Sbjct 3926 GCGACTGGCTCTGGCAGATGTAGGCGCCGCGGTCGGCGGCCATATCGAGCACAGCCTTCT 3867 Query 113754 TCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATC---CACGA 113810 |||||| |||||||| || |||| | ||| | |||| ||||| | |||| Sbjct 3866 GCTTGATCTCCCACACCGTCTTGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACG- 3808 Query 113811 TATTTTGGATGGAGCCACCCGCCTTGACCATGAGATCCTT---CATATCCTTTGACCAGA 113867 || || | ||||| | | || || || | || || || | ||||| Sbjct 3807 --TTCTGCACTGAGCCGTG-GTCGTG--CAGGATCTGGTTACGCACCTCGGGCGTCCAGA 3753 Query 113868 GACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGA 113927 || | || |||| |||| || || | ||| || || | ||||| || || | Sbjct 3752 TGCCGAGCTCGATGAGCTCCTTCATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAA 3693 Query 113928 GGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGA 113987 | ||| | || || ||||||||| | ||||| | |||| ||||| || | || Sbjct 3692 GCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGA 3633 Query 113988 TTTGGGCGGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTT 114047 | || ||||| || || || ||||| || || | || || ||| || | || | | Sbjct 3632 TCTGCGCGGTAGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACT 3573 Query 114048 CCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTC-TCCCCCTG---- 114102 | | || ||||||| ||| ||||||| || || | | || | || Sbjct 3572 GCGCGACGCTGGCCTTGAGCGCGGCCCAGTCCCAG---AGGCCGGACGTCGGCGTGACGC 3516 Query 114103 -CCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATG 114161 |||||| || |||||| ||| || | | | || || ||||| | | |||| | Sbjct 3515 CCCACATGTCGTACTGGAAGATGCCCTTGCTCACAGGTGAGCCCTCGTAGCTGGCGTACG 3456 Query 114162 GGCCCTCAACCTCCGCCAATTCG---GAGCTCGCCTCGAGGGCTGCGTGATACATTGTCT 114218 |||| | ||| || | || ||| ||||| | || || |||| |||| Sbjct 3455 GGCCGTGCTCCTTTGCGAGCTCCATCGAG---GCCTCCATCGCGCCGAAGTACAGCGTCT 3399 Query 114219 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA 114277 | || ||| || | | |||||||||| ||||||||| || | || | Sbjct 3398 CGAAGATGTTCTTGTTGAGCTCGCGGGCCTCGTCGCTCTCAAACGCGTAGCC--CATGAG 3341 Query 114278 -ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGA 114336 || || ||||||||||||| || || |||| ||| || ||||| || | || || Sbjct 3340 GATGAACGCATCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGC- 3282 Query 114337 CTTTCGAGCGGTCTCCACG---GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 114393 |||| ||| ||| | || || | || | ||||| ||| | || || || Sbjct 3281 --TTCGCTCGGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTGAGGTTGCG 3224 Query 114394 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATT 114453 ||||| ||||| ||||| || | ||||| | | | || || | | || || || Sbjct 3223 CGTGACGACCTTGGTGATGTCGTACAGCTTCTTGAAGTCGAAGGTCT---TGTCGTCGTT 3167 Query 114454 GACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGT 114513 ||| |||| | || ||||| ||||| || || ||||| | | ||| || || Sbjct 3166 CACAAACTTCGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGACGT 3107 Query 114514 GTACTCTATAATTTCCGTACA-CAAAT-TTGAACTCTT---AATGGTGCCCAAGTTCTTT 114568 |||||| | | || ||| || | ||| ||| ||| ||||| | ||||| Sbjct 3106 GTACTCGAGCACCTC---ACAGCAGAGGTTG--CTCGAGCGAATCGTGCCGAGGTTCTGC 3052 Query 114569 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTT 114628 || || ||||| ||| |||| |||||||| |||||||| ||||| |||||||| | Sbjct 3051 TGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATC 2992 Query 114629 TGGGACTTGAGAATAGCCTTCCAGACATCGGCGGCTG-GCACAG-TGGCGTTG---GCTC 114683 || |||| ||| || || ||||| || |||| || | | | | ||| || | Sbjct 2991 TGCGACTCGAGGATCGCGAACCAGA-----GCTGCTGCGCGCGGATCGTCTTGCGCGCGC 2937 Query 114684 GCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCC-ACGGCCTCTGAG 114742 | ||||| |||||||| ||| || || || ||||| |||||| ||| | | | || Sbjct 2936 GGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCACCCCACGTCGTGT-AG 2878 Query 114743 AGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTC 114802 || || || |||| | |||||||| || ||| | || ||||||| |||||| Sbjct 2877 AGACCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTC 2818 Query 114803 ATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGA-GCTTCTTCATC 114861 |||||||| || || ||||| | || |||| ||||| || ||| || || | | Sbjct 2817 ATGAAGAGATCGGGAATCCACATCGCGTAGAATAGATCACGCGCGCGGTGCAGCT-CGTT 2759 Query 114862 CCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTA 114921 || || || | || | || || | ||| || ||||||||||| || || || Sbjct 2758 GCCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGATA 2699 Query 114922 CACCGCGATTGACCCCTTACGA---CGACCAGCCTGGTTTACATACCTCGCTGTGGCATT 114978 || ||||| || ||||| || | ||| |||| | ||||| | ||| ||| | || Sbjct 2698 CATCGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCACATAACGCGCCGTGTCGTT 2639 Query 114979 AAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGA 115036 || ||||| ||||| || | || || | || ||| ||||| || || || |||| Sbjct 2638 GAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTTGTGCCACGGATGTACGA 2579 Query 115037 GACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATT 115096 | || | || | || | || | | | ||| || || || |||||||| ||||| Sbjct 2578 G--TTGGTCGCGCGGATGTTGTGCACGCTGACACCGATGCCGCCGGCCCACTTGGAGATG 2521 Query 115097 TGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATA 115156 ||||||| | |||| || | ||||| || ||||||||||| |||| | |||| Sbjct 2520 CAGGCGCACTGCTTGAGCGTGTCATAGATGCCTTCGATCGAGTCGTCCTTCATGGCGAGC 2461 Query 115157 AGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCG 115216 |||||||| ||||| || || | || || || |||||||| || || || |||||| Sbjct 2460 AGGAAGCACGACGACAGCTGCGGGCGAGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCG 2401 Query 115217 TGGATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCC 115276 || |||| | | ||| ||||| | ||||| ||||| | ||||| ||||| | | Sbjct 2400 TGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCATGC 2341 Query 115277 CCGTGAATACCGATCGAGACCCGCATAAACATGTATTG-GGGTGTTTCCATC-AGGATAC 115334 ||| || |||| | ||| |||| || ||| | || ||| | | || | | | | Sbjct 2340 TTGTGGATGCCGACAGCGACGCGCAGAATCATCTGCTGCGGGCGCT--CAGCGACCTTGC 2283 Query 115335 CATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 115383 || ||| | | ||||||| |||||| | ||||||| ||||| || Sbjct 2282 CACCGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTA 2234 >seq957 Length=6759 Score = 176 bits (194), Expect = 5e-39 Identities = 298/423 (70%), Gaps = 14/423 (3%) Strand=Plus/Minus Query 125915 GAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCC 125974 ||||||||||||||||| | ||||||| |||| || |||| ||||||| || | Sbjct 6153 GAGTTCATACCGATGAGCTCCACCGGGAGCGAGTCCTGGACGAACTCCTTCTCGATCGCG 6094 Query 125975 ACGGCTTCCCGCACGATGGCGTGAATG-GTGTCCACCCCAGGTCTATTGCGCAAAGTCTT 126033 || || || || | ||| |||| ||| | | | || | | ||| || ||| Sbjct 6093 ACAGCATCGCGAATGATCTCGTGGATGCGAGACTCGGGGAGCTTGTTGGCG---AG-CTT 6038 Query 126034 GAAGAGTTCCAC-GGCA----AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCA 126088 | |||| | | |||| || || |||||||||||||||||| |||||||| || Sbjct 6037 G--GAGTACAGCAGGCACGCGAAGTCGCAGTGGAGACCCTCGTCACGCGAGATGAGCTCG 5980 Query 126089 TTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAAT 126148 |||||||||| || || ||||| || || |||||||| | |||||| || | || || Sbjct 5979 TTCGAGAAGCTGAGGCCAGGCATAAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAAC 5920 Query 126149 GAACCCGAGAAGAAGATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGC-AAAGGA 126207 || |||||||||||||| ||||| ||| |||||||| | || |||||| || || | Sbjct 5919 GAGCCCGAGAAGAAGATGCCCTCGACAGCAGCGAACGCGACGATACGCTCGGCGAACGCG 5860 Query 126208 GCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGAC 126267 ||||| | | ||| ||||||| | |||||| |||||||| |||| | ||| |||| Sbjct 5859 GCGCGGC-GCGAGTCGCACCACTTGAGCGCCCAGTGCGCCTTCTTCTGCACACAAGGGAT 5801 Query 126268 GGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTAT 126327 |||| ||| || | || | ||||| || | | || ||||||||| | || || Sbjct 5800 CGTCTCGATGGCGCGGAGAAGGTGGTTCTTCTCGGTCTGGTCCTTGATGTACGTGTCGAT 5741 Query 126328 GAG 126330 ||| Sbjct 5740 GAG 5738 Score = 123 bits (136), Expect = 3e-23 Identities = 266/389 (68%), Gaps = 14/389 (4%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || || ||||||||||||||||| ||||| || | | ||| | ||||| Sbjct 6550 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 6491 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 125876 | || || |||||| || | || |||||| | |||| | | |||||| | Sbjct 6490 CCAGTCGAACGGGTTCGACACCTTGTAGATC-TTGGCAACACCAAGCGCGTGGAGGAGGC 6432 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 |||| | | | |||||||||||| |||| ||||||||||||||||| | Sbjct 6431 GATCGGCGCAGAACTCAATGTACTGGCACATGAGAGACGAGTTCATACCGATGAGCTCCA 6372 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 ||||| | |||| || |||| ||||||| || | ||||| || || | ||| ||| Sbjct 6371 CCGGGAGGGAGTCCTGGACGAACTCCTTCTCGATCGCGACGGCATCGCGAATGATCTCGT 6312 Query 125997 GAATG-GTGTCCACCCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-GGCA----A 126050 | ||| | | | || | | ||| || |||| |||| | | |||| | Sbjct 6311 GGATGCGAGACTCAGGGAGCTTGTTGGCG---AG-CTTG--GAGTACAGCAGGCACGCGA 6258 Query 126051 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCA 126110 | || |||||||||||||||||| || ||||| || |||||||||| || || |||| Sbjct 6257 AATCGCAGTGGAGACCCTCGTCACGCGAAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCA 6198 Query 126111 TGAGACCCCGCTTCTTCAACCAGAAAATC 126139 |||| || |||||||| | |||||| ||| Sbjct 6197 TGAGGCCGCGCTTCTTGAGCCAGAAGATC 6169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597185146284800