Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1862 425 5e-114 >seq1862 Length=4717 Score = 425 bits (470), Expect = 5e-114 Identities = 1232/1884 (65%), Gaps = 64/1884 (3%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||||| ||||||| |||||| || || ||||||||||||||||| | | ||||| | Sbjct 2228 TACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGTACCTCCTGCGCGTCGGTGGCAAG 2287 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || | ||||| ||||| ||| || | |||||||||| |||| || ||| || ||| Sbjct 2288 GTCGCTGAGCGCCCGCAGCAGATGATTCTGCGCGTCGCTGTCGGCATCCACAAGCATGAC 2347 Query 93838 AT----GCCGAATGTTTTGCGGGCTTTCAGAG-ACATGCGGGACAAGAGGTATACCATG- 93891 || |||| | | || | | ||| ||||| | ||| || | || | Sbjct 2348 ATCGACGCCGC--GCT---CGAGACGTACGAGTACATGTCG--CAA-AGCTTCTTCACGC 2399 Query 93892 --GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCC 93949 || || ||||| ||||||||||| || || || || ||| |||| ||||| |||| Sbjct 2400 ACGCGACGCCGACGCTGTTCAACGCCGGCACGCCTCGCCCGCAGCTGTCGTCGTGCTTCC 2459 Query 93950 TGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGA 94009 || | | | |||| |||||| ||| || || | |||| |||||| | || || Sbjct 2460 TGCTCGCCATGAAGGACGACTCGATCGAAGGCATCTATGACACGCTCAAGCAGTGCGCCT 2519 Query 94010 CCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTT 94069 |||||| || | || || || ||||| |||| || ||| || | || || | | Sbjct 2520 GCATCTCCAAGTGGGCCGGCGGCATCGGTGTCAGCGTGCACAACATCCGCGCGACCAACT 2579 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 | |||||||| || || || ||| | || ||||||||||| || ||||| || || |||| Sbjct 2580 CGTACATCCGTGGCACAAACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTTCA 2639 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 || || ||||||| || ||||| |||||||| || | | | ||||| || |||||| | | Sbjct 2640 ACGACACGGCGCGTTATGTGGATCAGGGTGGCGGCAAGCGCAAGGGCTCGTTCGCGATGT 2699 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 |||||||||| |||||||| ||| | | ||| ||||||| ||||||||||||| Sbjct 2700 ATCTCGAGCCGTGGCACGCCGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGCA 2759 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 |||| ||| | | || | || || |||||||| | ||| | || || || || |||| Sbjct 2760 ACGAGCTGCACCGCGCGCGTGATCTATTCTACGCGATGTGGATTCCCGATCTCTTCATGA 2819 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | ||||| ||| ||| || ||||| || || || || || || || || || | Sbjct 2820 AGCGCGTTGAGGCCAACGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCGCCGGGTCTCT 2879 Query 94370 --CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGC-AGGGCA 94426 |||||| | || || | || || | |||| | |||| | ||| ||||| Sbjct 2880 ACACGACGTGGGGTGA-CGAG-TTCGAGGCGCTGTACCACCAGTACG-AGCGCGAGGGCC 2936 Query 94427 AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 || | ||| || || | |||| ||| |||| | || ||| | | Sbjct 2937 GCGCGCGCAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCGATCCTCGAGTCGCAGATCG 2996 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGC 94546 ||||||| ||||| ||||| ||| ||||||||| |||| |||||| ||||||||| Sbjct 2997 AGACGGGCACGCCGTACATGCTGTACAAGGACTCGTGCAACCGCAAGTCGAACCAGCAGA 3056 Query 94547 ACCTCGGGGTGAT---CAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTC 94603 ||||||| ||| | |||| || || ||| ||| | ||||||| || || | Sbjct 3057 ACCTCGGCACGATTCGCTCGAGC---AACCTCTGCTGTGAGGTGCTCGAGTACACGTCGC 3113 Query 94604 CGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATG 94663 | |||||| | || ||||| ||||| | |||||| ||||| | || ||| | | Sbjct 3114 CCGACGAGGTCGCGGTGTGCAACCTCGCGTCCATCGCGCTGTCGAAGTTTGTG---AACG 3170 Query 94664 CCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGG 94723 | ||| | | ||||| | || |||| || || | |||| | | Sbjct 3171 ACGACAAG---------ACCTTCGACTTCAAGAAGCTGTACGACATCAC--CAAGG-TCG 3218 Query 94724 TCTTG---AACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGA 94780 || | ||||| |||| ||| ||||||| |||| |||||| |||| ||||| ||| Sbjct 3219 TCACGCGCAACCTCAACAAGGTCATCGACATCAACTACTACCCGATCCCCGAGGCCGAGC 3278 Query 94781 ACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGG 94840 |||||| || || || |||||||||||||| |||||| ||||||| ||| | Sbjct 3279 GAAGCAACCTGCGCCACCGCCCGATCGGCATCGGCGTGCAGGGTCTCGCGGATGCGTTCA 3338 Query 94841 TGATGATGCGTCTGCCCTACGACTCTG---TCGACGCGGC---GGGTTTGAATTTGAACA 94894 | | ||| | ||||| | || ||||| ||| | | || ||||| Sbjct 3339 TCCTCATGGG------CTACGCGTTTGAGAGCGACGAGGCCCGCGAGCTCAACAAGAACA 3392 Query 94895 TATTCGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACG 94954 | ||||| | | || | ||| || ||| | || | | | || | ||| Sbjct 3393 TCTTCGAGACGCTGTACTTCGGCGCGATGGAGGCCTCGATGGAGCTCGC---AAAGGAGC 3449 Query 94955 GCGGGCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACC 95014 ||| || ||| | | || || || || ||||||| || |||| |||| Sbjct 3450 ACGGCCCGTACGCCAGCTACGAGGGCTCACCTGTGAGCAAGGGCATCTTCCAGTACGACA 3509 Query 95015 TCTGGGGTGTGAAGC---CCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTA 95071 | ||||| || | || | || || || | ||||||| || || || || Sbjct 3510 TGTGGGGCGTCACGCCGACGTCCGGCCTCTGGGACTGGGCCGCGCTCAAGGCCAGCGTCG 3569 Query 95072 TCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGC 95131 | |||| ||| ||| ||||||| | || || ||||| ||||| || || |||| Sbjct 3570 CGCAGTACGGCGTGCGCAACTCGCTGCTGCTCGCGCCGATGCCGACGGCGTCTACCGCGC 3629 Query 95132 AGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGG 95191 ||||||| ||||||||||||||| |||| || ||||| ||||| |||||||| | || | Sbjct 3630 AGATCCTCGGCAACAACGAGTCGATCGAGCCGTTCACGACCAACATGTACAACCGCCGCG 3689 Query 95192 TGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGG 95251 |||| || || || ||| | || | |||||| |||| | ||| || | || | Sbjct 3690 TGCTTGCAGGCGAGTTCACGATCGTGAACAAGTACCTGATGAAGGAGCTCATCGAGCTCG 3749 Query 95252 GTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACA 95311 | | ||| | |||| ||||| | || | || | ||||||| || |||||| Sbjct 3750 GCATCTGGACGCCCGAGGTGCGTAACCAGATCCTGCACGACCACGGCTCAGTGCAGAACG 3809 Query 95312 TCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGC 95371 | | || ||||| | | | |||| | |||||||| |||||||||||| |||| Sbjct 3810 TGCGCGTGATCCCGGATGCCGTGAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGA 3869 Query 95372 GCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAGAGNNNNNNNNNNN 95431 | | ||||| || |||| |||||| ||| |||||||||||| Sbjct 3870 AGGCTGTGCTCGATATGGCCGCCGACCGCGGCGCCTACATCTGCCAGAGCCAGTCGCTCA 3929 Query 95432 NNNNNNNNATGGCCGAGCCCAGTCGCGGAAAAATAACGTCCATGTTGTTCTACGGGTGGA 95491 || || ||||| | | | || | ||||||||| || |||| ||||| Sbjct 3930 ACGTGCACATCGCGGAGCCGACGATCAGCAAGCTGACGTCCATGCACTTTTACGCGTGGA 3989 Query 95492 GAAAGGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCCAAAGGCGGACTCCATAC 95551 |||||||||||||| |||||||| || |||| | | | || ||||| || | || | Sbjct 3990 AGAAGGGTCTCAAGACGGGTATGTACTACCTGCGCAGCCGACCGAAGGCCGATGCGATCC 4049 Query 95552 AGTTCGCCCTAGAAAAGTCGGTCA 95575 ||||| | | || ||| ||| || Sbjct 4050 AGTTCACGGTCGACAAGGCGGCCA 4073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494583688057600