Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1862 304 1e-77 seq1079 102 8e-17 seq957 91.5 1e-13 >seq1862 Length=4717 Score = 304 bits (336), Expect = 1e-77 Identities = 1141/1756 (65%), Gaps = 39/1756 (2%) Strand=Plus/Minus Query 152722 TGCGCAAATAATACATGCCCGTTTTGAGGCCGCAGCGCCACGAGTAATTGTGAATCGAAG 152781 |||||| || ||||| ||||| ||||| || ||||| |||| ||| || || | Sbjct 4025 TGCGCAGGTAGTACATACCCGTCTTGAGACCCTTCTTCCACGCGTAAAAGTGCATGGACG 3966 Query 152782 TCATCACAGCGTACGTCGGTTGCGCCACGAACAGATTAAACGATTGGCTCTGATCTATGA 152841 ||| | | |||||| | ||| | | || || | ||| |||||||| ||| Sbjct 3965 TCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATGT 3906 Query 152842 AAGCGTTACGGTCGGCCGCCATCTCAATCAT-GCGTTTTGCCTTCATCTCCCAGGCGGTT 152900 | ||| |||||||| ||||| || | || || || ||| || |||||||| | || Sbjct 3905 AGGCGCCGCGGTCGGCGGCCATATCGAGCACAGCCTTCTGC-TTGATCTCCCACACCGTC 3847 Query 152901 TTGTACAAATTTTTAACGCTATCCGGTATACCTTCAATGTTCTGAATAGAGCCCTTGT-G 152959 |||||| | || ||| |||||| || | | |||||| | ||||| | || | Sbjct 3846 TTGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACGTTCTGCACTGAGCCGTGGTCG 3787 Query 152960 TGCAAAAATAGCGTTTCGTATTTCGGGCGTGTACACGTTCAGTTTAATGAGGTCATCGAT 153019 |||| | | ||| || | |||||||| | | | || | ||||| || | || Sbjct 3786 TGCAGGATCTG-GTTACGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCAT 3728 Query 153020 CAAGTACTGGTTGACCA-CTTGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGC 153078 || ||||| ||| || | | |||| |||||| || | ||| || | || | ||| Sbjct 3727 CAGGTACTTGTTCACGATCGTGAA-CTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGG 3669 Query 153079 TAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCA 153138 | ||||| || || | || ||||| ||||| || || || || || | || ||||||| Sbjct 3668 TCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTAGACGCCGTCGGCA 3609 Query 153139 TGTACGCCACCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTCGTCCTTCAACGCC 153197 | ||| | || || || || |||| ||||| | || ||| | | |||| | ||| Sbjct 3608 TCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGG-CCTTGAGCGCG 3550 Query 153198 TGCCAATCCCACAGCGCCGACGGTGTCG---CGTTCCACATGTCGTACTGTAACACTCCT 153254 ||| ||||| || | |||| | || || ||||||||||||||| || | || Sbjct 3549 GCCCAGTCCCAGAGGCCGGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAGATGCCC 3490 Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGT-CGCGTTGGGCCAGTTCGCA 153313 || | || ||| | | | ||| ||||| | | || | | || || || Sbjct 3489 TTGCTCACAGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTTG-CGAGCTC-CA 3432 Query 153314 GCTAG-CCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCG 153372 | || |||| | |||||| |||| | || ||| ||| | || ||||| || | Sbjct 3431 TCGAGGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGG 3372 Query 153373 CTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATAC 153432 | || |||||||| ||| || || || | || || || || |||||||| | | Sbjct 3371 CCTCGTCGCTCTCAAACGCGTAGCCCATGAGGATGAACGCATCCGCGAGACCCTGCACGC 3312 Query 153433 CGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCT-ATGGGATAGTGA 153491 ||| |||||| || || || | |||||| ||| ||| |||| || || |||| Sbjct 3311 CGATGCCGATCGGGCGGTGGCGCAGGTTGCTTCGC-TCGGCCTCGGGGATCGGGTAGTAG 3253 Query 153492 TTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTC 153551 ||| ||||| | ||||||||||||||| || || || || || | | || ||| Sbjct 3252 TTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGTCGTACAGCTTC 3193 Query 153552 TCGAAATCATAGGTCATTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGA 153611 | ||| || ||||| | |||||| | | | |||| || || || ||||| || Sbjct 3192 TTGAAGTCGAAGGTCTTGTCGTCGTT-CACAAACTTCGA--CAGCGCGATGGACGCGAGG 3136 Query 153612 TTACAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCT 153670 || || || || ||| |||| || || |||||| | | ||| |||||||||||| Sbjct 3135 TTGCACACCGCGACCTCGTCGGGCGACG-TGTACTCGAGCACCTCACAGCAGAGGTTGCT 3077 Query 153671 GCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAG 153730 | || ||| | || ||||| || ||||| ||||||| ||| ||| | || Sbjct 3076 CGAGCGAATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAG 3017 Query 153731 CATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATA---AACCTATGCAGGTCCTG 153787 ||||||||| ||| ||||||| |||| |||| ||| |||| || | ||| Sbjct 3016 CATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTG---CTG 2960 Query 153788 CGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAA 153847 ||| || | | || || ||||||||||| |||||| | | |||||| ||| || Sbjct 2959 CGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAA 2900 Query 153848 CTCGTCGCCGTA-GCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACA 153906 |||||| || | | || | ||| || || || | ||| || | ||| |||| Sbjct 2899 CTCGTCACCCCACGTCGT-GTAGAGACCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACT 2841 Query 153907 TATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGT 153966 ||| ||| | ||||| |||||| ||||| || | ||| | |||||| | || | Sbjct 2840 CGCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAATAGAT 2781 Query 153967 C--GCGCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCA-CGCTATAGA 154023 | |||||| |||| ||| ||| ||| || || | ||| | | | | ||| Sbjct 2780 CACGCGCGCGGTGCAG--CTCGTTGCCGTGGTTCTTCTTGAGGTCGAGGAACTCGA-AGA 2724 Query 154024 TGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTTCCG---CCCT 154080 ||||||||||||| || || | || | || | | || || ||||| ||| |||| Sbjct 2723 TGTCGGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCCT 2664 Query 154081 GATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGG 154140 |||| || | ||| || | | |||||| ||||||| |||||| | |||||| | | | Sbjct 2663 GATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACG 2604 Query 154141 TGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAA 154200 |||||| || | ||| | | | ||||| | | |||||| | || || | Sbjct 2603 AGCCGTTTGTGCCACGGATGTACGAGTTGGTCGCGCGGATGTTGTGCACGCTGACACCGA 2544 Query 154201 TGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGTCGA 154260 |||||||| | |||| || ||| ||||| | ||||| |||||||| |||| Sbjct 2543 TGCCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATGCCTTCGA 2484 Query 154261 TGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTTCCCG 154320 | ||||| | | |||||| ||| ||||| ||| ||||| |||| || | Sbjct 2483 TCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGAGGCGTGCCGG 2424 Query 154321 CCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTT 154380 | || || || || |||||||||| || | |||| ||| |||||| | Sbjct 2423 CGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCT 2364 Query 154381 CGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCT 154440 ||| ||| | ||||| |||| ||| ||||||| |||||||||| | ||| |||| Sbjct 2363 CGAGCGCGGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGAATCATCTGCT 2304 Query 154441 GCGGACGTTCGGCGAC 154456 |||| || || ||||| Sbjct 2303 GCGGGCGCTCAGCGAC 2288 >seq1079 Length=6315 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||||||| || || |||| Sbjct 970 GACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 911 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| || |||||||| || || || ||||| ||| || || || | | Sbjct 910 AAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTCTGCTTGACA 851 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | | |||| | | ||| || |||| ||| | ||| || || |||||||| || Sbjct 850 TTG-TCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTT 792 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 791 GACGAAGATCTGCAT 777 >seq957 Length=6759 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 52614 GAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGC 52673 || || || || ||||| |||||||| | || | | || ||||| ||||| | || Sbjct 6326 GATGCCGTCGCGATCGAGAAGGAGTTCGTCCAGGACTCCCTCCCGGTGGAGCTCATCGGT 6385 Query 52674 ATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAG 52733 |||||| || ||||||| ||||||| ||||| || ||||| || | | Sbjct 6386 ATGAACTCGTCTCTCATGTGCCAGTACATTGAGTTCTGCGCCGATCGCCTCCTCCACGCG 6445 Query 52734 CTCGG-GCAGCCAAAGTACTTCAACGC-TCGCAATCCGTTTGAGTTTATGAACAACATTT 52791 || || | ||||| | || ||| | ||| || ||||| || | ||| ||| || | Sbjct 6446 CTTGGTGTTGCCAAGAT-CTACAAGGTGTCG-AACCCGTTCGACTGGATGGACATGATCT 6503 Query 52792 CGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||| |||||||||||||||| ||||||||||| || |||||||| Sbjct 6504 CGCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTGGGCGAGTA 6549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496122454003200