Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1862 161 9e-35 seq1079 140 3e-28 seq5064 109 5e-19 >seq1862 Length=4717 Score = 161 bits (178), Expect = 9e-35 Identities = 372/552 (67%), Gaps = 25/552 (5%) Strand=Plus/Minus Query 145661 CTTCCGTGCCGTCGTCGT--CCATTTTGCGTTTCTTGCCGCACGA-GGCCGCCGCTTCGG 145717 |||| | ||||||||||| || ||||| |||| ||| ||||||| || Sbjct 4108 CTTCTGCGCCGTCGTCGTGGCC----TGCGT------CCGCTCGATGGCCGCC--TT--- 4064 Query 145718 CGTCGACGGTGAACTGCGTCGCTTGAGCGGCCGGTTTTGTGCGCAGATAGTACATGCCGG 145777 |||||| |||||||| |||| | || |||| ||||||| |||||||| || | Sbjct 4063 -GTCGACCGTGAACTGGATCGCATCGGCCTTCGGTCGGCTGCGCAGGTAGTACATACCCG 4005 Query 145778 TCTTGAGCTGTTTCTGCCACGTGTAAAAGTGTATGCTCGACA--TGACCGAGTACGTGGG 145835 ||||||| |||| ||||| ||||||||| ||| || || | | || ||| || Sbjct 4004 TCTTGAGACCCTTCTTCCACGCGTAAAAGTGCATGGACGTCAGCTTGCTGAT--CGTCGG 3947 Query 145836 TTCGGCGACAAACAAATTTAGAGATTGGCTCTGATCAATGAAAGGAGCC-CGGTCGGCGG 145894 || |||| || || || || |||||||| ||| | || ||| |||||||||| Sbjct 3946 CTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATGTA-GGCGCCGCGGTCGGCGG 3888 Query 145895 CCATGTCTATCATGCACTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGT 145954 |||| || | || ||| || || ||||| | || || | ||||| ||| Sbjct 3887 CCATATCGAGCACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCTTCACGG 3828 Query 145955 GCTGGGGTATTTCGTCAATGTTCTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCA 146014 | || || || | ||||||||| || || | ||| || || | ||| |||| Sbjct 3827 CATCCGGGATCACGCGCACGTTCTGCACTGAGCCGTGGTCGTGCAGGATCTGGTTACGCA 3768 Query 146015 ATTCTGGAGTGTAAATGTTCAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCT 146074 || || || | ||| | || | ||| |||| || || |||| ||| || | | Sbjct 3767 CCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATCAGGTACTTGTTCACGATCG 3708 Query 146075 GAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACT 146134 |||||||| || || ||||| | |||| |||| | ||||||||||||| ||||| Sbjct 3707 TGAACTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACT 3648 Query 146135 CGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGT 146194 ||||||| ||||| |||||||| || | || || ||||| ||| | ||||| |||| Sbjct 3647 CGTTGTTGCCGAGGATCTGCGCGGTAGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGT 3588 Query 146195 TTCTCACGCCGT 146206 | | |||||||| Sbjct 3587 TGCGCACGCCGT 3576 >seq1079 Length=6315 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||| | || | ||| ||||| || || || ||||| || Sbjct 1006 GCACCACCACGAAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCC 947 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | |||||| || || ||||| || || ||| |||||| ||||||||||| ||| Sbjct 946 GAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGA 887 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || |||||||||||| ||| |||||||||| | || | | |||||| | |||| Sbjct 886 GGGATTCCCTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCG 827 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | ||| |||||||||||||| || || || |||||||| Sbjct 826 ACGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCAT 777 >seq5064 Length=2045 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| || | |||||| || || ||||| || || Sbjct 5 CGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGGCCGTCCTCGAGCTGCTTGCC 64 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| |||||| ||||||||||| ||||| || |||||||||||| ||| |||||||| Sbjct 65 GGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTCTGCTT 124 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | || | | | |||| |||||| || | ||| | ||| || || || || || Sbjct 125 GACATTGTCAATGCTATCCGAGGGCTCGACGTCCAGGGTGATCGTCTTCCCCGTGAGGGT 184 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 185 CTTCACGAAGATCTGCAT 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475366708774400