Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1862 259 6e-64 seq957 165 1e-35 seq17555 84.2 3e-11 >seq1862 Length=4717 Score = 259 bits (286), Expect = 6e-64 Identities = 1193/1861 (64%), Gaps = 75/1861 (4%) Strand=Plus/Minus Query 115541 TCGCCTTGGCCTTTGATCGG------AGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCC 115594 |||| | |||||| | |||| ||||||||||| ||||||||||| |||| ||||| Sbjct 4046 TCGCATCGGCCTTCGGTCGGCTGCGCAGGTAGTACATACCCGTCTTGAGACCCTTCTTCC 3987 Query 115595 AGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCA 115654 | || || | ||||| || | || |||| || || || | ||| | ||| | Sbjct 3986 ACGCGTAAAAGTGCATGGACGTCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGA 3927 Query 115655 TACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCA 115714 ||| || |||| || || || || || |||||||| | |||| ||||| Sbjct 3926 GCGACTGGCTCTGGCAGATGTAGGCGCCGCGGTCGGCGGCCATATCGAGCACAGCCTTCT 3867 Query 115715 TCTTGATTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATC---CACGA 115771 |||||| |||||||| || |||| | ||| | |||| ||||| | |||| Sbjct 3866 GCTTGATCTCCCACACCGTCTTGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACG- 3808 Query 115772 TATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTT---CATATCCTTTGACCAGA 115828 || || | ||||| | | || || || | || || || | ||||| Sbjct 3807 --TTCTGCACTGAGCCGTG-GTCGTG--CAGGATCTGGTTACGCACCTCGGGCGTCCAGA 3753 Query 115829 GACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACCCGCGA 115888 || | || |||| |||| || |||| ||| || || | ||||| || || | Sbjct 3752 TGCCGAGCTCGATGAGCTCCTTCATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAA 3693 Query 115889 GGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGA 115948 | ||| | || |||||||||||| | ||||| | |||| ||||| || | || Sbjct 3692 GCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGA 3633 Query 115949 TTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCC 116008 | || || || || || || ||||| || || | || || |||||| | || | Sbjct 3632 TCTGCGCGGTAGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACT 3573 Query 116009 CCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCC---CCTCCC 116065 | | || ||||||| ||| ||||||| || | ||| | | ||| Sbjct 3572 GCGCGACGCTGGCCTTGAGCGCGGCCCAGTCCCAGAGGCCGGACGTCGGCGTGACGCCCC 3513 Query 116066 ACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGC 116125 |||| || |||||| ||| || | | | | || || ||||| | | | || |||| Sbjct 3512 ACATGTCGTACTGGAAGATGCCCTTGCTCACAGGTGAGCCCTCGTAGCTGGCGTACGGGC 3453 Query 116126 CCTCAACCTCCGCCAATTCG---GAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAA 116182 | | ||| || | || ||| ||||| | || || |||| ||||| | Sbjct 3452 CGTGCTCCTTTGCGAGCTCCATCGAG---GCCTCCATCGCGCCGAAGTACAGCGTCTCGA 3396 Query 116183 AAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCG-AGACGGCACAAA-AT 116240 | ||| || | | |||||||||| ||||||||| || | || | || Sbjct 3395 AGATGTTCTTGTTGAGCTCGCGGGCCTCGTCGCTCTCAAACGCGTAGCC--CATGAGGAT 3338 Query 116241 AAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT 116300 || ||||||||||||| || || |||| ||| || ||||| || | || || | Sbjct 3337 GAACGCATCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTTGC---T 3281 Query 116301 TCGAGCGGTCTCCACG---GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGT 116357 ||| ||| ||| | || || | || | ||||| ||| | || || || || Sbjct 3280 TCGCTCGGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTGAGGTTGCGCGT 3221 Query 116358 GACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGAC 116417 ||| ||||| ||||| || | ||||| | | | || || | | || || || || Sbjct 3220 GACGACCTTGGTGATGTCGTACAGCTTCTTGAAGTCGAAGGTCT---TGTCGTCGTTCAC 3164 Query 116418 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 116477 | |||| | || ||||| ||||| || || ||||| | | ||| || ||||| Sbjct 3163 AAACTTCGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGGGCGACGTGTA 3104 Query 116478 CTCTATAATTTCCGTACA-CAAAT-TTGAACTCTT---AATGGTGCCCAAGTTCTTTTGA 116532 ||| | | || ||| || | ||| ||| ||| ||||| | ||||| || Sbjct 3103 CTCGAGCACCTC---ACAGCAGAGGTTG--CTCGAGCGAATCGTGCCGAGGTTCTGCTGG 3049 Query 116533 TTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGG 116592 || ||||| ||| |||| |||||||| ||||| || ||||| |||||||| | || Sbjct 3048 TTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGATCTGC 2989 Query 116593 GACTTGAGAATAGCCTTCCATACATCGGCGGCTG-GCACAG-TGGCGTTG---GCTCGCC 116647 |||| ||| || || ||| | || |||| || | | | | ||| || || | Sbjct 2988 GACTCGAGGATCGCGAACCAGA-----GCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGC 2934 Query 116648 CCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCC-ACAGCCTCTGAGAGC 116706 |||| |||||||| ||| || ||||| ||||| |||||| || | | | |||| Sbjct 2933 CCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCACCCCACGTCGTGT-AGAGA 2875 Query 116707 CCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 116766 || || |||| | || ||||| || ||| | || ||||||| ||||||||| Sbjct 2874 CCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATG 2815 Query 116767 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCC 116825 ||||| || || ||||| | ||| |||| ||||| || ||| || || | | || Sbjct 2814 AAGAGATCGGGAATCCACATCGCGTAGAATAGATCACGCGCGCGGTGCAGCT-CGTTGCC 2756 Query 116826 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC 116885 || || | || | || || | ||| || ||||||||||| || || |||| Sbjct 2755 GTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGATACAT 2696 Query 116886 CGCGATTGACCCCTTGCGA---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAA 116942 ||||| || |||||||| | ||| |||| | ||||| | |||||| |||| || Sbjct 2695 CGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGAA 2636 Query 116943 TACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAAT--ACGAGAC 117000 ||||| ||||| || | || || | || ||| ||||| || || || ||||| Sbjct 2635 CACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTTGTGCCACGGATGTACGAG-- 2578 Query 117001 TTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGT 117060 ||| | || | || | ||| | | | ||| || || || |||||||| ||||| Sbjct 2577 TTGGTCGCGCGGATGTTGTGCACGCTGACACCGATGCCGCCGGCCCACTTGGAGATGCAG 2518 Query 117061 GCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGG 117120 ||||||| | |||| || | ||||| || ||||||||||| |||| | |||| ||| Sbjct 2517 GCGCACTGCTTGAGCGTGTCATAGATGCCTTCGATCGAGTCGTCCTTCATGGCGAGCAGG 2458 Query 117121 AAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGG 117180 ||||| ||||| || || | || || || |||||||| || || || |||||||| Sbjct 2457 AAGCACGACGACAGCTGCGGGCGAGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGC 2398 Query 117181 ATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCG 117240 |||| | | ||| ||||| | ||||| ||||| | | | | ||||| | | | Sbjct 2397 GTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCATGCTTG 2338 Query 117241 TGAATACCGATTGAGACCCGCATAAACATGTATTG-GGGTGTTTCCATC-AGGATACCAT 117298 || || |||| | ||| |||| || ||| | || ||| | | || | | | ||| Sbjct 2337 TGGATGCCGACAGCGACGCGCAGAATCATCTGCTGCGGGCGCT--CAGCGACCTTGCCAC 2280 Query 117299 CGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGT 117358 ||| | | ||||||| |||||| | ||||||| ||||| ||| | | ||| ||| Sbjct 2279 CGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCAAAGT 2220 Query 117359 C 117359 | Sbjct 2219 C 2219 >seq957 Length=6759 Score = 165 bits (182), Expect = 1e-35 Identities = 295/425 (69%), Gaps = 18/425 (4%) Strand=Plus/Minus Query 127388 GAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCC 127447 ||||||||||||||||| | ||||||| |||| || |||| ||||||| || | Sbjct 6153 GAGTTCATACCGATGAGCTCCACCGGGAGCGAGTCCTGGACGAACTCCTTCTCGATCGCG 6094 Query 127448 ACAGCTTCCCGTACGATGGCGTGAATA-GTGTCCACCCCAGGTCTATTGCGTAAAGTCTT 127506 ||||| || || | ||| |||| || | | | || | | ||| || ||| Sbjct 6093 ACAGCATCGCGAATGATCTCGTGGATGCGAGACTCGGGGAGCTTGTTGGCG---AG-CTT 6038 Query 127507 GAAGAGTTCCACAG-----CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCA 127561 | |||| | ||| | || || |||||||||||||||||| |||||||| || Sbjct 6037 G--GAGTACAGCAGGCACGCGAAGTCGCAGTGGAGACCCTCGTCACGCGAGATGAGCTCG 5980 Query 127562 TTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAAT 127621 |||||||||| || || ||||| || || |||||||| | |||||| || | || || Sbjct 5979 TTCGAGAAGCTGAGGCCAGGCATAAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAAC 5920 Query 127622 GAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAA---G 127678 ||||| ||||||||||| ||||| ||| |||||||| | | ||||||||| || | Sbjct 5919 GAGCCCGAGAAGAAGATGCCCTCGACAGCAGCGAACGCGACGATACGCTCGGCGAACGCG 5860 Query 127679 GAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGG 127738 | |||| | | || ||||||| | |||||| || ||||| |||| | ||| ||| Sbjct 5859 GCGCGGCGC---GAGTCGCACCACTTGAGCGCCCAGTGCGCCTTCTTCTGCACACAAGGG 5803 Query 127739 ACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCT 127798 | |||| ||| || | || | ||||| || | | || ||||||||| | || Sbjct 5802 ATCGTCTCGATGGCGCGGAGAAGGTGGTTCTTCTCGGTCTGGTCCTTGATGTACGTGTCG 5743 Query 127799 ATGAG 127803 ||||| Sbjct 5742 ATGAG 5738 Score = 123 bits (136), Expect = 3e-23 Identities = 265/389 (68%), Gaps = 14/389 (4%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || || ||||||||||||||||| ||||| || | ||| ||| | ||||| Sbjct 6550 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 6491 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 127349 | || || |||||| || | || |||||| | |||| | | |||||| | Sbjct 6490 CCAGTCGAACGGGTTCGACACCTTGTAGATC-TTGGCAACACCAAGCGCGTGGAGGAGGC 6432 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 |||| | | | |||||||||||| |||| ||||||||||||||||| | Sbjct 6431 GATCGGCGCAGAACTCAATGTACTGGCACATGAGAGACGAGTTCATACCGATGAGCTCCA 6372 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 ||||| | |||| || |||| ||||||| || | || || || || | ||| ||| Sbjct 6371 CCGGGAGGGAGTCCTGGACGAACTCCTTCTCGATCGCGACGGCATCGCGAATGATCTCGT 6312 Query 127470 GAATA-GTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAG-----CAA 127523 | || | | | || | | ||| || |||| |||| | ||| | | Sbjct 6311 GGATGCGAGACTCAGGGAGCTTGTTGGCG---AG-CTTG--GAGTACAGCAGGCACGCGA 6258 Query 127524 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 127583 | || |||||||||||||||||| || ||||| || |||||||||| || || |||| Sbjct 6257 AATCGCAGTGGAGACCCTCGTCACGCGAAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCA 6198 Query 127584 TGAGACCCCGCTTCTTCAACCAGAAAATC 127612 |||| || |||||||| | |||||| ||| Sbjct 6197 TGAGGCCGCGCTTCTTGAGCCAGAAGATC 6169 >seq17555 Length=415 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 176831 GGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTC 176890 ||||| || ||||||| ||| || ||||| |||||||| ||| | ||||| ||| || Sbjct 50 GGGAAGACGCCGTAGTAATCGCGTCCAACAACAGAGAGGCCACTGATTGCGAAGGTTTTG 109 Query 176891 GCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGATTGTGCCGTCCCCGCCTTG 176950 || || || ||||| |||| || || || || ||| || | || || || || | | Sbjct 110 GCTGACTCGCCCTCAGTCAGAATCAGAGTGCAGTTTTGAGCCTTCGCTGTGCCGGCGTAG 169 Query 176951 TTCGCATCGTCCAACTTGGGAATACCAGT 176979 ||||||||||| | ||| || || || || Sbjct 170 TTCGCATCGTCGAGCTTTGGGATTCCTGT 198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613334190969600