Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1862 250 4e-61 seq957 114 2e-20 seq217 91.5 2e-13 >seq1862 Length=4717 Score = 250 bits (276), Expect = 4e-61 Identities = 533/780 (68%), Gaps = 21/780 (3%) Strand=Plus/Minus Query 203836 CGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTA 203892 || |||||| ||||||||||| || || | |||| || | ||| | ||| ||||| Sbjct 4069 CGCCTTGTCGACCGTGAACTGGATCGCAT---CGGCCTTCGGTCGGCTGCGCAGGTAGTA 4013 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 ||| || ||||| || ||||||| |||| |||| | ||||||||| | ||| ||||| | Sbjct 4012 CATACCCGTCTTGAGACCCTTCTTCCACGCGTAAAAGTGCATGGACGTCAGCTTGCTGAT 3953 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGAT 204011 | || || || ||||| | ||| || |||||||| ||| |||| | |||||| || | Sbjct 3952 CGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATGTA-GGCGCCGCGGT 3894 Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTC 204071 | |||||||||| || | | ||||||| |||||||||||||||||| || || Sbjct 3893 CGGCGGCCATATCGAGCACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCT 3834 Query 204072 TGGTGTGTTGAGGCACATCTTCCCACGTCCTGATC-GAGCCGTTGTCGGCCATCAGTCTC 204130 | | | || | | | ||||| ||| | ||||||| |||| || | ||| Sbjct 3833 TCACGGCATCCGGGATCACG-CGCACGTTCTGCACTGAGCCGTGGTCGTGCAGGA-TCTG 3776 Query 204131 ATC-CTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTT 204189 | | | ||| | ||| ||||| | | ||| |||||| || ||||| ||| Sbjct 3775 GTTACGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATCAGGTACTTGTT 3716 Query 204190 GATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTC 204249 | |||| || || || | ||||| | ||| || ||| |||| | ||||| || || Sbjct 3715 CACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTC 3656 Query 204250 GAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAG 204309 || || |||||||||||||| ||||| ||||| ||||| ||||| || || || || Sbjct 3655 GATCGACTCGTTGTTGCCGAGGATCTGCGCGGTAGACGCCGTCGGCATCGGCGCGAGCAG 3596 Query 204310 CAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCA- 204368 ||| ||||||||||| ||||| | ||| ||| ||| || | || |||||| | Sbjct 3595 CAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGGCCTTGAGCGCGGCCCAGTCCCAGAG 3536 Query 204369 -TCGCAC-TGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCT 204426 || || | || | ||||||||||||||| |||| |||||||| | || || || Sbjct 3535 GCCGGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAGATGCCCTTGCTCACAGGTGA 3476 Query 204427 GCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGC 204486 ||||| ||| | | || || | ||| | ||| |||| |||||| |||| || Sbjct 3475 GCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTTGCGAGCTCCATCGAGGCCTCCATCGC 3416 Query 204487 GTGATAGTACATGGTCTCAAAGATCTGAACGTTTAATCTGGC-GGCCTC--CGTTCCGTC 204543 | |||||| ||||| ||||| | | || | || || |||||| || || || Sbjct 3415 GCCGAAGTACAGCGTCTCGAAGATGTTCTTG-TTGAGCTCGCGGGCCTCGTCGCTC--TC 3359 Query 204544 AAACGCCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCCCAACGG 204603 |||||| |||| | | ||| | ||||| | |||||||| ||||| || | ||| Sbjct 3358 AAACGCGTAGCCCATGAGGATGAACGCATCCGCGAGACCCTGCACGCCGATGCCGATCGG 3299 >seq957 Length=6759 Score = 114 bits (126), Expect = 2e-20 Identities = 259/382 (68%), Gaps = 12/382 (3%) Strand=Plus/Minus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 |||| |||||||| ||||||||||| || |||||||| || ||||||| |||||| || | Sbjct 6032 ACAGCAGGCACGCGAAGTCGCAGTGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGA 5973 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034 | ||||||| ||||| | || ||| |||||||| || || | ||| || | | | Sbjct 5972 AGCTGAGGCCAGGCATAAGGCCGCGCTTCTTGAGCCAGAAGATAG-AGCAGAACGAGCCC 5914 Query 160035 TA-AAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 | || ||||| ||||| || || || ||||| |||| | ||| | || | ||| Sbjct 5913 GAGAAGAAGATGCCCTCGACAGCAGCGAACGCGACGATACGCTCGGCGAACGCGGC---- 5858 Query 160094 GTGTCATGGGTC-CACCTTTTG---GCCCATTCAGCCTTCTT-TGCGATGCACGGCATGC 160148 | | | | ||| |||| ||| ||||| | |||||||| ||| | || || || Sbjct 5857 GCGGCGCGAGTCGCACCACTTGAGCGCCCAGTGCGCCTTCTTCTGC-ACACAAGGGATCG 5799 Query 160149 GCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCA 160208 ||||| |||| | | || || ||| || |||||||| || | || | Sbjct 5798 TCTCGATGGCGCGGAGAAGGTGGTTCTTCTCGGTCTGGTCCTTGATGTACGTGTCGATGA 5739 Query 160209 GCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATG 160268 || |||||||| || | ||| | || || || || ||||| ||| |||||| | Sbjct 5738 GCAGCGAGTACACCTCCGAGTGGATGTTCTCAATCGCAATCTGGAAGCCGTAGAAGCAAC 5679 Query 160269 TCGCCTCCAGATACTGCACCTC 160290 |||||| || ||||||||| Sbjct 5678 GCGCCTCAGGAACCTGCACCTC 5657 >seq217 Length=11889 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 116094 TCGTGTCTGTTTTACCAAAGATCTGCAGACATGGGGTTGGGCGTACCCTTTAACGTTGCG 116153 ||||||| | | ||||| | || || |||||||| | ||||| || |||||| | ||| Sbjct 4522 TCGTGTCAGATGTACCAGCGCTCAGCTGACATGGGACTCGGCGTGCCTTTTAACATCGCG 4581 Query 116154 AGCTACGCGCTACTGACTCATATTATGGCACATTTGGCGGACCTGGAAGTCGGAGAATTG 116213 ||||||||||| |||||| | || || || | | | ||| | ||||| || Sbjct 4582 AGCTACGCGCTGTTGACTCGACTCATCGCGCAGGTCACAGGGCTGCGTGCTGGAGACTTC 4641 Query 116214 ATACACTCTATTGGGGACGCGCACATCTACACCAACCATGTGGCGCAGCTCGAGCTGCAG 116273 || ||| | || || || |||||||||||| |||||||||| | ||| || ||||| Sbjct 4642 ATCCACACGATCGGCGATGCGCACATCTACTTGAACCATGTGGAACCGCTTAAGGTGCAG 4701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794930966233600