Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1862 183 4e-41 seq957 154 2e-32 >seq1862 Length=4717 Score = 183 bits (202), Expect = 4e-41 Identities = 494/745 (66%), Gaps = 13/745 (2%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| | ||| | |||| ||||| |||| ||||| | | || || || | | Sbjct 2299 CCCGCAGCAGATGATTCTGCGCGTCGCTGTCGGCATCCACAAGCATGACATCGACGCCGC 2358 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||||| | ||||| | | | |||| ||||| || || || || || Sbjct 2359 GCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACGCACGCGACGCCGACGCTGTT 2418 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| || || || | || || |||| || ||||| | || | ||||| || Sbjct 2419 CAACGCCGGCACGCCTCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCGCCATGAAGGACGA 2478 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| | ||||| || | ||| |||| | || ||| ||||| |||||||| || Sbjct 2479 CTCGATCGAAGGCATCTATGACACGCTCAAGCAGTGCGCCTGCATCTCCAAGTGGGCCGG 2538 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTACA 111908 || ||||| | | | || | || | || | ||| |||||| | | || ||| Sbjct 2539 CGGCATCGGTGTCAGCGTGCACAACATCCGCGCGACCAA--CTCGTACATCCGTGGCACA 2596 Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968 || || || | || | | || ||||| ||||| || |||| ||| ||||| ||| Sbjct 2597 AACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTTCAACGACACGGCGCGTTAT 2656 Query 111969 GTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 112025 || | || | ||| | |||||||| || |||| | ||||| ||||| |||||| Sbjct 2657 GTGGATCAGGGTGGCGGCAAGCGCAAGGGCTCGTTCGCGATGTATCTCGAGCCGTGGCAC 2716 Query 112026 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGC 112085 || || ||| | |||||||| || | ||||| || | ||| | | | | || Sbjct 2717 GCCGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGCAACGAGCTG-CACCGCGC 2775 Query 112086 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 112144 || ||||| |||| ||| | |||||||| ||||||||||||||| | ||||||| | Sbjct 2776 GCGTGATCTATTCTACGCGATGTGGATTCCCGATCTCTTCATGAAGCGCGTTGAGGCCAA 2835 Query 112145 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGT-GGGTG 112203 ||| | ||| || || || || || |||| || ||||||| | | | ||| ||||| Sbjct 2836 CGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCGCCGGGTCTCTAC-ACGACGTGGGGTG 2894 Query 112204 AGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGC 112263 | ||||| || || || ||| |||||||| || | || ||| |||| | | Sbjct 2895 ACGAGTTCGAGGCGCTGTACCACCAGTACGAGCGCGAGGGCCGCGCGCGCAAGACGATCC 2954 Query 112264 CAGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAT 112322 || || | | | ||| || || ||| |||| || | |||||| || || || || Sbjct 2955 GCGC-GCAGCAGCTCTGGTTCGCGATCCTCGAGTCGCAGATCGAGACGGGCACGCCGTAC 3013 Query 112323 ATGCTTTACAAAGACGCCTGTAACC 112347 ||||| ||||| ||| | || |||| Sbjct 3014 ATGCTGTACAAGGACTCGTGCAACC 3038 >seq957 Length=6759 Score = 154 bits (170), Expect = 2e-32 Identities = 200/274 (73%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 102048 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 102107 ||||| |||| ||| || ||||| | |||||||| || || | |||||| | Sbjct 5738 CTCATCGACACGTACATCAAGGACCAGACCGAGAAGAACCACCTTCTCCGCGCCATCGAG 5797 Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 102167 || | || ||| | || ||||| ||| | ||||| | ||||||| || | | || Sbjct 5798 ACGATCCCTTGTGTGCAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACTCGC-GCCG 5856 Query 102168 CGTTCCTTT-GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 102226 || | || || ||||| || |||| || || ||| ||||| ||||||||||| || Sbjct 5857 CGCCGCGTTCGCCGAGCGTATCGTCGCGTTCGCTGCTGTCGAGGGCATCTTCTTCTCGGG 5916 Query 102227 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 102286 || |||||| |||| | |||||||||||||| || || ||||| || ||| ||||||| Sbjct 5917 CTCGTTCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTTATGCCTGGCCTCAGCTTCTC 5976 Query 102287 CAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 |||||||| ||||| ||||||||||| |||||| Sbjct 5977 GAACGAGCTCATCTCGCGTGACGAGGGTCTCCAC 6010 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 102246 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 102305 |||||||||||||| || |||||||| || ||| ||||||| |||||||| || || ||| Sbjct 6176 TGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATTTCGCGT 6235 Query 102306 GACGAGGGACTCCAC 102320 |||||||| |||||| Sbjct 6236 GACGAGGGTCTCCAC 6250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620567350643200