Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1862 178 2e-39 seq3450 140 4e-28 seq957 105 8e-18 >seq1862 Length=4717 Score = 178 bits (196), Expect = 2e-39 Identities = 724/1126 (64%), Gaps = 34/1126 (3%) Strand=Plus/Minus Query 110092 AGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTA 110151 || || ||| ||||||| |||||||| || |||| || || ||||| || || ||| Sbjct 3342 AGGATGAACGCATCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGTGGCGCAGGTT- 3284 Query 110152 GAGCGTCGAGCAGTTTCTACG---GGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTC 110208 || ||| | | || | ||||| ||||| |||||||||| ||||| || Sbjct 3283 --GCTTCGCTCGGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGTTGAGGTTG 3226 Query 110209 TTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTA 110268 ||| || ||| ||||| || | || || | | | ||||| || || || | Sbjct 3225 CGCGTGACGACCTTGGTGATGTCGTACAGCTTCTTGAAGTCGAAGGTCTTG---TCGTCG 3169 Query 110269 TTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG 110328 || ||| | || | || || || ||||| || |||||||| | |||||| | || Sbjct 3168 TTCACAAACTTCGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCG--GGCG 3111 Query 110329 --GTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTT---AATGACACCCAAGTTCT 110383 ||||| || | | || || | |||| ||| ||| || | ||||| Sbjct 3110 ACGTGTACTCGAGCACCTCACAGCAGAGGTTG---CTCGAGCGAATCGTGCCGAGGTTCT 3054 Query 110384 TCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCG 110443 ||| ||||| ||| |||||| | ||||| || |||||||| || || || || || Sbjct 3053 GCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGA 2994 Query 110444 TCTGTGACTTGAGAATGGCCTTCCATACAT-CGGCGGCGGGGACAGT--TGCGTTAGCGA 110500 |||| |||| ||| || || ||| | | | ||| || ||| || |||| ||| Sbjct 2993 TCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCG-CGCGGATCGTCTTGCGC--GCGC 2937 Query 110501 GACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAG--A 110558 | || || |||||||| | ||||| |||| || || | || ||| || | Sbjct 2936 GGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCACCC--CACGTCGTGTA 2879 Query 110559 AAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTT 110618 |||||| ||||| || || ||||| ||| ||| | || ||||||| | ||| Sbjct 2878 GAGACCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTT 2819 Query 110619 CATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACG-GCAACGAGCCTCTTCAT 110677 |||||| || || |||||||||||||| |||| || ||||| || | || | || | Sbjct 2818 CATGAAGAGATCGGGAATCCACATCGCGTAGAATAGATCACGCGCGCGGTGCAGC-TCGT 2760 Query 110678 CACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGAT 110737 || ||||| || || | || || | ||| || | |||||| || ||||||| Sbjct 2759 TGCCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGAT 2700 Query 110738 AGACAGCGATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCAT 110794 | | |||| || ||||| || | || |||| | ||||| || || ||| | | Sbjct 2699 ACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCACATAACGCGCCGTGTCGT 2640 Query 110795 TGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGG 110854 |||| || | ||||| || | | || | || || ||||| || | || | Sbjct 2639 TGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTTGTGCCACGGATGTACG 2580 Query 110855 ACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTT 110914 | || | || || |||| ||| | | ||| || || || |||||||| || Sbjct 2579 AGTTGGTCGCGCGGATGTTGTGCACGCTGACACCGATGCCGCCGGCCCACTTGGAGATGC 2520 Query 110915 GTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTA 110974 || |||| |||| || |||| || || || ||||| || |||| |||| | | Sbjct 2519 AGGCGCACTGCTTGAGCGTGTCATAGATGCCTTCGATCGAGTCGTCCTTCATGGCGAGCA 2460 Query 110975 GAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCAT 111034 | ||||| || |||| ||| || |||||||| || || ||||| || || || ||||| | Sbjct 2459 GGAAGCACGACGACAGCTGCGGGCGAGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGT 2400 Query 111035 GAATGAACAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTAC 111094 | |||| | | ||| ||||| | | ||| || ||||| |||| | | || | Sbjct 2399 GCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCGCGGCGTCGATGTCATGCT 2340 Query 111095 CGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCAT 111154 ||| || || | || || |||| | ||| | || || || | ||| ||| Sbjct 2339 TGTGGATGCCGACAGCGACGCGCAGAATCATCTGCTGCGGGCGCTCAGCGACCTTGCCAC 2280 Query 111155 CAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAAAGTA 111200 | || ||| | ||||| |||||| || ||||||| |||||||| Sbjct 2279 CGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAAAGTA 2234 >seq3450 Length=3014 Score = 140 bits (154), Expect = 4e-28 Identities = 327/484 (68%), Gaps = 17/484 (4%) Strand=Plus/Minus Query 11496 AATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTT 11555 ||||| ||||||||||||||| || || || | || | || ||||| ||||||||||| Sbjct 1986 AATCTGACGATCGAAACGACCCGGACGAAGAATGGCCTTGTCGAGAATGTCGACACGGTT 1927 Query 11556 TGTAGCGGCAATGACTACAATGCCAGTCTCATT---GTCGAAACCGTCCATTTCTGTGAG 11612 |||| | |||| || || | ||| ||| | || ||| |||||||| || ||| Sbjct 1926 TGTACCCGCAAGTACAACCACGCC---CTCGCTCGAGTTGAAGCCGTCCATCTCGACGAG 1870 Query 11613 AAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTT 11672 |||||||||| || | || ||||| || || | || | || | || ||| Sbjct 1869 CAGCTGGTTGAGTGTGTTCTCTCGCTCGTCATT-ACCGCCAGAGAACGTTCC-CTTGCTA 1812 Query 11673 CTT-----ACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT 11727 | | | ||||||| || || |||||||| || || || ||||| ||| ||||| Sbjct 1811 CGTGCACGAGCGACAGCATCGATTTCATCGATAAAGACAATGCACGGAGAGTTTGCACGA 1752 Query 11728 GCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAG 11787 || | ||| | || || |||||| || || ||||| || |||||||||| ||| Sbjct 1751 GCTTCACGGAACAAATCGCGCACACGCGACGGACCCACACCGACAAACATCTCAATGAAA 1692 Query 11788 TTTGCGGCAG-AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAG 11846 | | | | | || |||||| ||| || ||| ||| ||||| || | || ||||| Sbjct 1691 TCCGAGCCCGAAATACTGAA-GAATGGCACACTAGCTTCACCGGCCGTTGCCTTCGCGAG 1633 Query 11847 GAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 || |||||||| || || || | || | || ||||| || |||||||| ||||| Sbjct 1632 CAGGGTCTTACCAGTGCCCGGAGGTCCGACAAGCAGGGCACCCTTCGGGATCTTAGCACC 1573 Query 11907 ACTTCCAAAGTAGCGC-TCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCT 11965 || | | ||| || || ||| |||||| || |||| |||| | ||||| || Sbjct 1572 GAGATCAGTGAATCGCTTCTGGTTTC-GGAGGAAATCAACAAACTCCATGATTTCCTTCT 1514 Query 11966 TGGC 11969 | || Sbjct 1513 TCGC 1510 >seq957 Length=6759 Score = 105 bits (116), Expect = 8e-18 Identities = 170/242 (70%), Gaps = 3/242 (1%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || || || ||||||||||| || ||||| || |||||||| || || Sbjct 6009 TGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATAAGGCCG 5950 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| ||||| | || || || || |||||||||||||| ||| Sbjct 5949 CGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCGACAGCA 5890 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAG--ACTTGTCGAACCACTTGAGAGCC 119684 ||||| |||| | |||||| || || | | || | | |||| |||||||||| ||| Sbjct 5889 GCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGCGCGAGTCGCACCACTTGAGCGCC 5830 Query 119685 CAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTT 119744 |||| ||||| || | || |||| || | |||||| || ||| || ||||| Sbjct 5829 CAGTGCGCCTTCTTCTGCACACAAGGGATCGTCTCGATGGCGCGGAGAAGGTGGTTCTTC 5770 Query 119745 TC 119746 || Sbjct 5769 TC 5768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588809908768000