Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1862 232 8e-56 seq957 125 8e-24 >seq1862 Length=4717 Score = 232 bits (256), Expect = 8e-56 Identities = 578/862 (67%), Gaps = 17/862 (2%) Strand=Plus/Minus Query 106543 AATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTA 106602 |||||| || | |||| ||||| ||| |||||||| |||||||| |||||||| Sbjct 3070 AATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTA 3011 Query 106603 GGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCG-GCTGGT 106660 ||||| |||||||| |||| |||| ||| || || ||| | | | ||| || | | Sbjct 3010 CGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGAT 2951 Query 106661 ACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCA 106720 | ||| || || ||||| |||||||| ||| || || || ||||| ||| Sbjct 2950 CGTCTTGCGC--GCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCA 2893 Query 106721 CCCACCG-CGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 106779 ||| || ||| | ||||||| || |||| || || ||||| || ||| | || Sbjct 2892 CCCCACGTCGT-GTAGAGACCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTT 2834 Query 106780 CTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-C 106838 ||||||| ||||||||||| || || |||||||||| | | || ||||| | | Sbjct 2833 GGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAATAGATCACGCGC 2774 Query 106839 ACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATATCCGCG 106897 | | || || ||| || ||||| || | | || |||||||| | ||| || ||| Sbjct 2773 GCGGTGCAGCT-CGTTGCCGTGGTTCT-TCTTGAGGTCGAGGAACTCGAAGATGTCGGCG 2716 Query 106898 TGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACA 106954 ||||| ||||| ||||| | |||| || ||||| || ||| || | |||| ||| Sbjct 2715 TGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCACA 2656 Query 106955 TAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTT 107014 || ||||| ||| |||| || ||||| ||||| || | | || | || || ||| Sbjct 2655 TAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTT 2596 Query 107015 GTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCC 107072 || || || || ||||| || | || | | | || | | | || || || | Sbjct 2595 GTGCCACGGATGTACGAG--TTGGTCGCGCGGATGTTGTGCACGCTGACACCGATGCCGC 2538 Query 107073 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 107132 | |||||||| ||||| || |||| | | || || ||||||| || | ||| |||| Sbjct 2537 CGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATGCCTTCGATCGAGT 2478 Query 107133 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGA 107192 | ||||| |||||| |||||||| |||| |||||| | || || || || |||| Sbjct 2477 CGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGAGGCGTGCCGGCGTTGA 2418 Query 107193 AGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGA 107252 | || || || || ||||| |||| | | ||| ||||| | ||||| ||||| | Sbjct 2417 ACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCG 2358 Query 107253 CAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTG 107312 | | || ||||| | | ||||||||||| || || |||| || ||| | || || Sbjct 2357 CGGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGAATCATCTGCTGCGGGC 2298 Query 107313 TTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAA 107372 || || ||||| ||| || | || || |||||| || || |||| |||| Sbjct 2297 GCTCAGCGACCTTGCCACCGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAA 2238 Query 107373 AGTAACCAAAATCATAGTCCCG 107394 |||| | | ||| |||| || Sbjct 2237 AGTAGTCGTACTCAAAGTCGCG 2216 >seq957 Length=6759 Score = 125 bits (138), Expect = 8e-24 Identities = 163/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||||||||| || || || || || || || ||||||| ||||| ||||| || || Sbjct 6010 GTGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATAAGGCC 5951 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | |||| |||||| || || ||||||||||| ||||| ||| Sbjct 5950 GCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCGACAGC 5891 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAA-GGAGCGAGACTTTGTGTCAAACCATTTCATTG 117463 || ||||| | | ||||||||||| | ||| | | | ||| |||| || | | Sbjct 5890 AGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGC-GCGAGTCGCACCACTTGAGCG 5832 Query 117464 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 |||| | ||||||||||| | ||| || | || | |||||| Sbjct 5831 CCCAGTGCGCCTTCTTCTGCACACAAGGGATCGTCTCGATGGC 5789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589814425414400