Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq217 212 5e-50 seq4313 82.4 6e-11 >seq217 Length=11889 Score = 212 bits (234), Expect = 5e-50 Identities = 407/599 (68%), Gaps = 1/599 (0%) Strand=Plus/Minus Query 29789 CGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGT 29848 ||||||| ||| ||||||||||| || | || ||||| ||| || || || | |||| Sbjct 4705 CGAGCTGCACCTTAAGCGGTTCCACATGGTTCAAGTAGATGTGCGCATCGCCGATCGTGT 4646 Query 29849 GGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGT 29908 ||| || ||||| | ||||| ||||| || || || | || | || | || Sbjct 4645 GGATGAAGTCTCCAGCACGCAGCCCTGTGACCTGCGCGATGAGTCGAGTCAACAGCGCGT 4586 Query 29909 AGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGAC 29968 |||| ||||||||||| || || ||||| |||||||| | || | |||||| | ||||| Sbjct 4585 AGCTCGCGATGTTAAAAGGCACGCCGAGTCCCATGTCAGCTGAGCGCTGGTACATCTGAC 4526 Query 29969 ACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCA 30028 |||| ||||| |||| | ||||| ||||| || | |||| ||||| || || |||| Sbjct 4525 ACGACAGCTCGCCGTTGGCGACGTAGAACTGGCAGAACATGTGACACGGCGGCAGCGCCA 4466 Query 30029 TGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30088 | | ||| |||||||| || ||| ||||||||| | || | |||||| Sbjct 4465 TCTCCTTGAGGTCCGCAGGGTTCCATGCCGACATGATGATGCGACGATCGTTTGGGTTCG 4406 Query 30089 TCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCC 30148 || ||| || | | | | |||||| || || ||| || ||||| || || Sbjct 4405 TCTTGAGCTTGTGAATGACCTCCGCCAGCTGGTCGACTCCCTGGCCAGAGTAATCGGCGT 4346 Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208 |||| |||||||| || || || || | ||| ||||| || ||||| ||||| || | Sbjct 4345 GCATGGTCGTGTACTTGGCACCAAAGTGGCGCCATTGGAAGCCATACACTGGTCCGAGAT 4286 Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 | || |||| | || ||| || | | |||| | || |||| || || | | Sbjct 4285 CGCCAGCTTCACGATGTCCGAGACCGATGCTCTCCAGGTATTCCTTGGATCCATTACCAT 4226 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328 |||| || | | ||||| || | | |||| ||||||| || |||| ||||| Sbjct 4225 CCCAAATGTGGATGCCCTTGTCCTGCAACGTCTTGGCGTTTGTGTCGCCACTGATGAACC 4166 Query 30329 ACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAAA 30386 |||||||||| ||| ||||| | ||| || || | |||||||| || || |||||| Sbjct 4165 ACAGCAGCTCTTCCGCGACGCCGCGCCAGAATACGCGTTTGGTCGTCAGCAGCGGGAAA 4107 >seq4313 Length=2415 Score = 82.4 bits (90), Expect = 6e-11 Identities = 101/130 (78%), Gaps = 6/130 (5%) Strand=Plus/Plus Query 52047 CCAGAGATGGGCGACAAGTTT-GC-GTCGTTCACGGCGCAAAAGGGGACGTGCGGAGCCG 52104 || ||||| ||||||||||| || |||| |||||| || ||||| |||||| | Sbjct 1585 CCCGAGATCGGCGACAAGTTCAGCAGTCGC-CACGGC-CAGAAGGGCGTGTGCGGCACGA 1642 Query 52105 TCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCC-GACCTCATCATC 52163 ||| | ||||||||||||||| ||| || | ||||| || |||||| ||||| ||||| Sbjct 1643 TCCGCAACCAGGAGGACATGCCGTTCAACGACGACGGCGT-GTGCCCGGACCTGATCATG 1701 Query 52164 AACCCCCACG 52173 ||||| |||| Sbjct 1702 AACCCGCACG 1711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408505250590880