Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1862 322 9e-83 seq957 217 3e-51 >seq1862 Length=4717 Score = 322 bits (356), Expect = 9e-83 Identities = 1216/1879 (65%), Gaps = 93/1879 (5%) Strand=Plus/Minus Query 212562 TGTACTGGATCAGCAGCAGCCTTGG------TGCGTAGATAGTACATGCCGGTCTTTAGG 212615 || |||||||| ||| | ||||| | |||| || |||||||| || ||||| || Sbjct 4055 TGAACTGGATC-GCATCGGCCTTCGGTCGGCTGCGCAGGTAGTACATACCCGTCTTGAGA 3997 Query 212616 CCCTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGGTCA 212675 ||||| ||| ||| | |||||| | || |||||| ||| | Sbjct 3996 CCCTTCTTCCACGCGTAAAAGTGCATGGACGT---------CAGCTTG-----CTG---A 3954 Query 212676 TCCTCGTGGCCCAGATGT--AGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGT 212733 || ||| || ||||| | ||| || ||||| |||||| ||| | | | | | || Sbjct 3953 TCGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATGTAGGCGCCGCGGT 3894 Query 212734 CAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTT 212793 | |||||||| || | | | | |||| || ||||||||| |||||| | | || | Sbjct 3893 CGGCGGCCATATCGAGCACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTACTTCTCCT 3834 Query 212794 TGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCA 212853 | | | | || |||| || | | ||||||||| || || ||| | ||| | Sbjct 3833 TCACGGCATCCGGGATCACGCGCACGTTCTGCACTGAGCC---GTGGTCGTGCAGGATCT 3777 Query 212854 GG---CGCATGTCCTCGT---TCCAGAGGCCCCTGGTCTCCAGGCACT---TGACCAGGT 212904 || |||| ||||| |||||| ||| | ||| | | || | | ||||| Sbjct 3776 GGTTACGCA---CCTCGGGCGTCCAGATGCC---GAGCTCGATGAGCTCCTTCATCAGGT 3723 Query 212905 GAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGT 212964 ||| || ||| ||| || |||| ||||| | | | ||| | ||| | ||| Sbjct 3722 ACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGGTCGTGA 3663 Query 212965 AGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAG 213024 | |||||||| ||||||||| || || ||||| || || || || ||||| || | Sbjct 3662 ACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTAGACGCCGTCGGCATCGGCG 3603 Query 213025 CCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGT 213084 | | ||| || ||| | ||| |||| || ||| | | | ||| | ||||||| Sbjct 3602 CGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGGCCTTGAGCGCGGCCCAGT 3543 Query 213085 CCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTT 213144 |||| ||| ||| ||| ||| ||| ||||||||| |||| |||||||| | Sbjct 3542 CCCAGAGGCCGGAC--GTCGGCGTG----ACGCCCCACATGTCGTACTGGAAGATGCCCT 3489 Query 213145 TGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGG 213204 ||||||| || ||||| ||| || ||| ||||| |||||||| || ||||| | Sbjct 3488 TGCTCACAGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTTGCGAGCTCCATCG 3429 Query 213205 ACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCT 213264 | |||| || || || |||| | || || || || | | ||||||||| ||||| Sbjct 3428 AGGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCT 3369 Query 213265 CTGGGGACGTGAAGG-GCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCG 213323 | | | || | | | | |||| | |||| |||| || || ||||| || ||| Sbjct 3368 CGTCGCTCTCAAACGCGTAGCC-CATGAGGATGAACGCATCCGCGAGACCCTGCACGCCG 3310 Query 213324 ATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCA--CTCCTCCAAGGGGTAAAAGT 213381 |||||||| || | ||| | |||||| ||| | | ||| | ||||| ||| Sbjct 3309 ATGCCGATCGGGCGGTGGCGCAGGTTG--CTTCGCTCGGCCTCGGGGATCGGGTAGTAGT 3252 Query 213382 TGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACT 213441 || |||||||| ||||||||||||||| ||| | || ||||||| | | ||| | | Sbjct 3251 TGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGTCGTACAGCTTC- 3193 Query 213442 CGTGATTGAACACGTAGCCC---CCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCA 213498 ||||| || || | |||| | |||||||| | ||| |||||| || | Sbjct 3192 -----TTGAAGTCGAAGGTCTTGTCGTCGTTCACAAACTTCGACAGCGCGATGGACGCGA 3138 Query 213499 GGTTGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTG 213557 ||||||| || || ||||| | | | | | |||||||| | | ||| ||| |||||| Sbjct 3137 GGTTGCACACCGCGACCTCGTCGGGCGAC-GTGTACTCGAGCACCTCACAGCAGAGGTTG 3079 Query 213558 CTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA-GAATCCTTGTA 213616 || | || || ||||| |||||||| ||||| ||| ||||| | ||| || |||||||| Sbjct 3078 CTCGAGCGAATCGTGCCGAGGTTCTGCTGGTTCGAC-TTGCGGTTGCACGAGTCCTTGTA 3020 Query 213617 GAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCT 213676 |||||||| || | || ||||| | ||| ||| | || ||| | |||||| | | Sbjct 3019 CAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTG 2960 Query 213677 GGCCTTGACCACCCGCCTGACAGCTC-CGGGCGTAGC-CTCGTACTGTTCGTAGAGCTCG 213734 || || || || | || | ||| | | || ||||||||| | ||| ||| | Sbjct 2959 CGCGCGGA----TCGTCTTGC-GCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCC 2905 Query 213735 TTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGG-ACAGGATGCGGGACACATGAGGCT 213793 | ||| |||| ||||| | ||| || ||||| | | |||| || | ||||| Sbjct 2904 TCGAACTCGTCACCCCACGTCGTGTAGAGACCCGGCGCCTCGTTCGGG-CAGAACAGGCT 2846 Query 213794 CCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAA 213853 ||| || |||| | || | || |||||| || || || | ||||| |||| ||| Sbjct 2845 CCACTCGCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAA 2786 Query 213854 CAGGTCCCTGGTCC---TCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTC 213910 || || | | | | ||||| || ||| || || || || || || Sbjct 2785 TAGATCACGCGCGCGGTGCAGCTCGT---TGCCGTGGTTCTTCTTGAGGTCGAGGAACTC 2729 Query 213911 AAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTGCCG-- 213968 |||||||| |||||||||||||| | || || || || | |||| | ||||||| Sbjct 2728 GAAGATGTCGGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCC 2669 Query 213969 -CCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTT 214027 ||||| ||||| | ||| |||||| | |||||| | ||| || || ||||| Sbjct 2668 ACCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTT 2609 Query 214028 GGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAG 214087 ||| ||||| || || || |||||| || || | | |||| || | || Sbjct 2608 CGACGAGCCGTTTGTGCCACGGATGTACGAGTTGGTCGCGCGGATGTTGTGCACGCTGAC 2549 Query 214088 CCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCC 214147 || ||||| ||||| |||||||||| |||||| || | | || || |||||| Sbjct 2548 ACCGATGCCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATGCC 2489 Query 214148 GGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGA 214207 | || ||| || | | | |||| |||||| ||| ||||| || | | || Sbjct 2488 TTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGAGGCGT 2429 Query 214208 GCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTA 214267 ||| | |||||| ||||| || | || || | | || | | || | | | ||| Sbjct 2428 GCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTA 2369 Query 214268 GGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCACCTCATCAGCAT 214327 ||||| || | | | |||||| ||||||||||| | |||| | || | ||| Sbjct 2368 CGTCTCGAGCGCGGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGAATCAT 2309 Query 214328 GTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCCTTG---AGCAGGTAGGAGCGCTCCAG 214384 ||||| || | ||| | | || ||| || | || ||||| || ||| || Sbjct 2308 CTGCTGCGGGCGCTC--AGCGACC-TTGCCACCGACGCGCAGGAGGTACGACTTCTCGAG 2252 Query 214385 AGTCTTGAACCCAAAGTAG 214403 |||||||| ||||||||| Sbjct 2251 CGTCTTGAAGCCAAAGTAG 2233 >seq957 Length=6759 Score = 217 bits (240), Expect = 3e-51 Identities = 438/642 (68%), Gaps = 17/642 (3%) Strand=Plus/Minus Query 48041 AACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGT 48100 ||||||||||| ||| || || || | | |||| | | ||| ||||| | | | Sbjct 6111 AACTCCTTCTCGATCGCGACAGCATCGCGAATGATCTCGTGGATGCGAGACTCGGGGAGC 6052 Query 48101 TTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCC 48160 |||||| || | |||||| || |||| ||| || ||||| | ||| | || ||||| Sbjct 6051 TTGTTG-GC--GAGCTTGGAGTACAGCAGGCACGCGAAGTCGCAGTGGAGACCCTCGTCA 5995 Query 48161 CGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAG 48220 || ||||||| |||| ||||||| ||| |||||||| | || | || ||||||||| Sbjct 5994 CGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATAAGGCCGCGCTTCTTGAGCCAG 5935 Query 48221 AAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGC 48280 || || | ||| ||||| ||||||||||||||||| || || ||||||||| || Sbjct 5934 AAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCGACAGCAGCGAACGCGACGATA 5875 Query 48281 CTCTCTCCGAAAGAAGC---GTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTC 48337 | ||| |||| | || | | ||| | ||| |||||||||| |||||| Sbjct 5874 CGCTCGGCGAACGCGGCGCGGCGCGAGTC---GCACCACTTGAGCGCCCAGTGCGCCTTC 5818 Query 48338 TTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTTGCACTC-ACCTGCGTC 48396 |||| | || || |||||||| ||||| |||| || | || ||| ||| ||| Sbjct 5817 TTCTGCACACAAGGGATCGTCTCGATGGCGCGGAGAAGGTGGTTCTTCTCGGTCTG-GTC 5759 Query 48397 CGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGC 48453 | | || || |||||||| | ||||| ||| ||||| | ||||| || || Sbjct 5758 CTTGATGTACGTGTCGATGAGCAGC---GAGTACACCTCCGAGTGGATGTTCTCAATCGC 5702 Query 48454 GATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTC 48513 |||||||| ||||||||| | |||||| |||||||| || || ||| || Sbjct 5701 AATCTGGAAGCCGTAGAAGCAACGCGCCTCAGGAACCTGCACCTCGCTGCTGAAGTTCAT 5642 Query 48514 CAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAG 48573 | || ||||| ||||| || ||||| || || ||||| || || || || || | Sbjct 5641 CGCGAGGTTCTCGTTGACGATGCCATCACTGGCCGCGAAGAACGCGAGCACGTGCTTGAT 5582 Query 48574 GAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTACGTCTTTGCCCAGGTCCAC 48633 || | |||||| |||| ||||| |||||| ||| | ||| | | ||||| | Sbjct 5581 AAAGTAGCGCTCATTGTCCGTGAGGTTGTTCCAGTCCTTGAGGTCGTGCACGAGGTCGAT 5522 Query 48634 TTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACAT 48675 |||||| | ||||||||| ||| || || |||||||| Sbjct 5521 CTCTTCCGCCGTCCAGAAGCTCGCCTCAGCCTTCTTGTACAT 5480 Score = 109 bits (120), Expect = 1e-18 Identities = 256/384 (67%), Gaps = 3/384 (1%) Strand=Plus/Minus Query 47842 GTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCAT 47901 ||| || ||||| | ||||| |||||||| ||||| |||| | |||||| | ||||| Sbjct 6550 GTACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCAT 6491 Query 47902 GAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGGTG 47961 || ||| ||||| | || || | | | | || | | | || ||| | Sbjct 6490 CCAGTCGAACGGGTTCGACACCTTGTAGATCTTGGCAACACCAAGCGCGTGGAGGAGGCG 6431 Query 47962 ATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACAC 48021 ||| ||| | |||| ||||| | ||||||| | |||||| || ||||| ||| Sbjct 6430 ATCGGCGCAGAACTCAATGTACTGGCACATGAGAGACGAGTTCATACCGATGAGCTCCAC 6371 Query 48022 GGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTT 48081 || | | | || ||||||||||| ||| ||||| || | | |||| | Sbjct 6370 CGGGAGGGAGTCCTGGACGAACTCCTTCTCGATCGCGACGGCATCGCGAATGATCTCGTG 6311 Query 48082 AACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTC 48141 | ||| ||||| | | | |||||| || | |||||| || |||| ||| || || || Sbjct 6310 GATGCGAGACTCAGGGAGCTTGTTG-GC--GAGCTTGGAGTACAGCAGGCACGCGAAATC 6254 Query 48142 CCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGAC 48201 | ||| | || ||||| || |||||| |||| ||||||| ||| |||||||||| Sbjct 6253 GCAGTGGAGACCCTCGTCACGCGAAATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATGAG 6194 Query 48202 CCCCCTCTGTTTGAGCCAGAAAAT 48225 || | || ||||||||||| || Sbjct 6193 GCCGCGCTTCTTGAGCCAGAAGAT 6170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931270107750400