Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq957 192 1e-43 seq1862 163 5e-35 >seq957 Length=6759 Score = 192 bits (212), Expect = 1e-43 Identities = 391/570 (69%), Gaps = 18/570 (3%) Strand=Plus/Plus Query 25480 TGGGAGATGTACAAGAAGGCTCAA---AACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 ||| ||||||||||||||||| | | || |||||| || |||||||| || || Sbjct 5474 TGGCAGATGTACAAGAAGGCTGAGGCGAGCTT---CTGGACGGCGGAAGAGATCGACCTC 5530 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | | ||| | | | |||| || || | | | |||| | ||| ||||| || Sbjct 5531 GTGCACGACCTCAAGGACTGGAACAACCTCACGGACAATGAGCGCTACTTTATCAAGCAC 5590 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA-GAGATT 25655 ||| | || ||||| || ||| |||||| || || |||||||| || |||| || || Sbjct 5591 GTGCTCGCGTTCTTCGCGGCCAGTGATGGCATCGTCAACGAGAACCTC-GCGATGAACTT 5649 Query 25656 CACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCG 25714 || ||| || |||||| | | || |||| || |||||||| |||||||| || || | Sbjct 5650 CAGCAGCGAGGTGCAGGTTCCTG-AGGCGCGTTGCTTCTACGGCTTCCAGATTGCGATTG 5708 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCG 25771 | || | ||||| |||||||| | ||| || || |||||||| | ||| Sbjct 5709 AGAACATCCACTCGGAGGTGTACTC---GCTGCTCATCGACACGTACATCAAGGACCAGA 5765 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 |||||| | | || | | ||||||||| || || | | ||| |||||||| Sbjct 5766 CCGAGAAGAACCACCTTCTCCGCGCCATCGAGACGATCCCTTGTGTGCAGAAGAAGGCGC 5825 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||| | |||||| | || | |||| |||| | |||||| | || || | Sbjct 5826 ACTGGGCGCTCAAGTGGTGCGACTCGCGCCGCGCCGCGTTCGCCGAGCGTATCGTCGCGT 5885 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 | |||||||| ||||||||||| ||| || ||||| ||| | ||||||||||||||| Sbjct 5886 TCGCTGCTGTCGAGGGCATCTTCTTCTCGGGCTCGTTCTGC-TCTATCTTCTGGCTCAAG 5944 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || ||||| || || ||| || |||||||||||| | ||||||||| Sbjct 5945 AAGCGCGGCCTTATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCTCGCGTGACGAGGGT 6004 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 |||||| | || || || |||||||| ||| Sbjct 6005 CTCCACTGCGACTTCGCGTGCCTGCTGTAC 6034 >seq1862 Length=4717 Score = 163 bits (180), Expect = 5e-35 Identities = 613/947 (65%), Gaps = 27/947 (3%) Strand=Plus/Minus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 || ||||| ||||| || |||||||| || |||| | | ||| |||||| Sbjct 3141 GCGAGGTTGCACACCGCGACCTCGTCGGGCGACGTGTACTCGAGCACCTCACAGCAGAGG 3082 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 ||||| | || || || |||| | || || |||||||| ||| | ||||||| Sbjct 3081 TTGCTCGAGCGAATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTG 3022 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 || ||||| | || ||| ||||| | ||| | | | || ||| | |||||| | Sbjct 3021 TACAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTG- 2963 Query 221894 CTG-GCGCTCACCGTCCTCTTGACTGCAC---CCTCGGTCTTTTCATACCCGGTATAGAG 221949 ||| |||| | |||| ||| || | ||||| || | ||| | || || Sbjct 2962 CTGCGCGCGGATCGTC---TTGCGCGCGCGGCCCTCGCGCT---CGTACTGGTGGTACAG 2909 Query 221950 CATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGG--CGGGACACATC 222007 | || |||| ||||| ||| | || || || || | ||| | |||| || | | Sbjct 2908 CGCCTCGAACTCGTCACCCCACGTCGTGTAGAGACCCGG-CGCCTCGTTCGGG-CAGAAC 2851 Query 222008 AGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCC 222067 || ||||| | |||| | | || | || ||||||||| || || ||||||| ||| Sbjct 2850 AGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCG 2791 Query 222068 TGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAAC 222127 | || ||||| | | || ||| ||| ||||| ||| ||| | || || | ||| Sbjct 2790 TAGAATAGATCACGCGCGCGGTGCAGCTCGTTGCCGTGGTTCTTCTTGAGGTCGAGGAAC 2731 Query 222128 TCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTG 222187 || || ||||| |||||||||||||| ||||| | || | | ||| |||||| | Sbjct 2730 TCGAAGATGTCGGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCG 2671 Query 222188 CCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247 |||||||||||||| | | || ||||||| | ||| || | || || || ||| Sbjct 2670 CCACCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCG 2611 Query 222248 TTGGATCGA-CCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGT--TACTGGCA 222304 || || ||| ||||| ||||| ||||||| | || | | || | | || Sbjct 2610 TTCGA-CGAGCCGTTTGTGCCACGGATGTACGAGTTGGTCGCGCGGATGTTGTGCACGCT 2552 Query 222305 GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATG 222364 |||| ||||| || ||||| || ||||| |||||| |||||| ||||| | Sbjct 2551 GACA--CCGATGCCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAG 2494 Query 222365 ATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTG 222424 ||||| || || ||||| ||||| | | ||||| || || ||||||| ||| | Sbjct 2493 ATGCCTTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGA 2434 Query 222425 GTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGA 222484 | | | |||||| |||||||| || | ||||| || ||| ||| ||||| Sbjct 2433 GGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTAC 2374 Query 222485 TCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATG 222544 ||||||||||| | | | |||||| | | ||| || | ||| | || Sbjct 2373 TCGTACGTCTCGAGCGCGGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGA 2314 Query 222545 TACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGCTGGAG---AGCAGGTACGATTTT 222601 ||| | ||| || | || ||| ||||| | | | || |||||||| || Sbjct 2313 ATCATCTGCTGCGGGCGCT---CAGCGACCTTGCCACCGACGCGCAGGAGGTACGACTTC 2257 Query 222602 TCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTG 222648 || || |||||||| |||||||||| | |||||||| | | |||| Sbjct 2256 TCGAGCGTCTTGAAGCCAAAGTAGTCGTACTCAAAGTCGCGGTCGTG 2210 Score = 87.8 bits (96), Expect = 3e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 221030 TGTACAGAGCCCTTGTTGACCAAAAGCTCGGTACGCATCTCGTCCGTCCATAGACCCCTC 221089 || || ||||| | || | || | || | |||||| |||| |||||| | || | Sbjct 3804 TGCACTGAGCCGTGGTCGTGCAGGATCTGGTTACGCACCTCGGGCGTCCAGATGCCGAGC 3745 Query 221090 TCTTCCAGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTC 221149 || ||| |||| | || || ||||||||| | ||| || || | ||||| | Sbjct 3744 TCGATGAGCTCCTTCATCAGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGG 3685 Query 221150 CTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCC 221209 | | ||||| ||| | |||||||| ||||| |||||||||||| |||||||| || Sbjct 3684 CGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCG 3625 Query 221210 GTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACTGTTGCGCA 221252 || || || ||||| || || | |||||| |||||||| Sbjct 3624 GTAGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGCGCA 3582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928582865766400