Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1862 190 2e-43 seq957 125 9e-24 seq6758 87.8 2e-12 >seq1862 Length=4717 Score = 190 bits (210), Expect = 2e-43 Identities = 545/823 (66%), Gaps = 25/823 (3%) Strand=Plus/Plus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGG 75187 || |||| ||| | | |||||||| |||| || || |||||| || || | || Sbjct 2216 CGCGACTTTGAGTACGACTACTTTGGCTTCAAGACGCTCGAGAAGTCGTACCTCCTGCGC 2275 Query 75188 CTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATC 75247 ||| ||||| || || ||| ||| | ||| | |||| ||||| |||||||| Sbjct 2276 GTCGGTGGCAAGGTCGCTGAGCGCCCGCAGCAGATGATTCTGCGCGTCGCTGTCGGCATC 2335 Query 75248 CACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 ||| | | ||||| || | | | ||||| ||||| | ||||| ||| | | ||| Sbjct 2336 CACAAGCATGACATCGACGCCGCGCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTC 2395 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGC 75367 | ||||| || || || || ||||| || || || || | |||||| |||| ||| Sbjct 2396 ACGCACGCGACGCCGACGCTGTTCAACGCCGGCACGCCTCGCCCGCAGCTGTCGTCGTGC 2455 Query 75368 TTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGT 75427 ||||| |||||| ||||| ||||| ||| | || ||||||| || || | | |||| Sbjct 2456 TTCCTGCTCGCCATGAAGGACGACTCGATCGAAGGCATCTATGACACGCTCAAGCAGTGC 2515 Query 75428 GCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAAT 75487 || ||||| |||||||| || || || || | | | || | | | || | Sbjct 2516 GCCTGCATCTCCAAGTGGGCCGGCGGCATCGGTGTCAGCGTGCACAACATCCGCGCGACC 2575 Query 75488 AAATCTCGT--ATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCG 75545 || ||||| || || || ||||| || || | || | | || ||||| |||| Sbjct 2576 AA--CTCGTACATCCGTGGCACAAACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCG 2633 Query 75546 TATTTAACGCCACAGCGCGCTATGTAAATCAAGCGGGGCG----TCGCAAGGGGTCCATC 75601 | || |||| ||| ||||| ||||| ||| || | |||| |||||||| || || Sbjct 2634 TGTTCAACGACACGGCGCGTTATGTGGATC-AGGGTGGCGGCAAGCGCAAGGGCTCGTTC 2692 Query 75602 GCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGA-GTTACGACTCAA 75660 ||| | || | || || ||||| ||||| ||| | |||||||| || | | || || Sbjct 2693 GCGATGTATCTCGAGCCGTGGCACGCCGACATCTTCGAGTTCCTCGACCTCAAGA-AGAA 2751 Query 75661 CCAAGGTGACGAAGAGGCTCGGTG-TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACC 75719 ||| || ||| || || | | | | ||||| || | | |||||||||| || | Sbjct 2752 CCACGGCAACG-AGCTGCACCGCGCGCGTGATCTATTCTACGCGATGTGGATTCCCGATC 2810 Query 75720 TTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCAC 75779 | ||||||||||| ||||||| || | ||| || ||||| || || |||| | Sbjct 2811 TCTTCATGAAGCGCGTTGAGGCCAACGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCGC 2870 Query 75780 CAGGTCTCTCCGACG-CGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAG 75838 | ||||||| | ||| || |||||| ||||| || || || ||| |||| || Sbjct 2871 CGGGTCTCTAC-ACGACGTGGGGTGACGAGTTCGAGGCGCTGTACCACCAGTACGAGCGC 2929 Query 75839 GAGGGTAGAGC---CAATGCGA-CTGTAC-CAGCCGCCGATGTTTGGAAGGCTATTCTCA 75893 ||||| | || ||| ||| | | | |||| || | ||| || || ||| Sbjct 2930 GAGGGCCGCGCGCGCAAGACGATCCGCGCGCAGCAGC-----TCTGGTTCGCGATCCTCG 2984 Query 75894 AATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGA 75936 | || |||| ||||| || || || || ||||| |||||||| Sbjct 2985 AGTCGCAGATCGAGACGGGCACGCCGTACATGCTGTACAAGGA 3027 >seq957 Length=6759 Score = 125 bits (138), Expect = 9e-24 Identities = 163/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| | || | || ||| | ||||||||||| | ||||| | || |||| ||| Sbjct 5789 GCCATCGAGACGATCCCTTGTGTGCAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGAC 5848 Query 65056 ACAAAGTCTCGCTCC-TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTT 65114 | | | ||| | ||||||||||| | | ||||| || ||| ||||| ||||| Sbjct 5849 TCGC-GCCGCGCCGCGTTCGCCGAGCGTATCGTCGCGTTCGCTGCTGTCGAGGGCATCTT 5907 Query 65115 CTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCT 65174 |||||| || || |||||| |||| | ||| | |||||||| || || ||||| ||||| Sbjct 5908 CTTCTCGGGCTCGTTCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTTATGCCTGGCCT 5967 Query 65175 ATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 ||||||| || || || || || || || |||||||||||| Sbjct 5968 CAGCTTCTCGAACGAGCTCATCTCGCGTGACGAGGGTCTCCAC 6010 >seq6758 Length=1450 Score = 87.8 bits (96), Expect = 2e-12 Identities = 246/372 (66%), Gaps = 18/372 (5%) Strand=Plus/Minus Query 14421 AGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACC 14480 || ||||||| ||||| || || || | | ||| || | || | ||||||||||||| Sbjct 1417 AGAATGAAATTAAGGTTGCTCAGCTTGGTGGATACGTGTCCGAGCATTCTGCGTACCACC 1358 Query 14481 ATGGTGAAGT-ATCCTTAGCGGACACGATTGTTAAGTTGGCAAACGACTACACGGGTTCA 14539 | |||||| | || | ||| ||||||| | || |||| | || | ||| Sbjct 1357 ACGGTGAACAGAGTCTCAACGG-CACGATTATCAACATGGCCCAAGATTTTGTGGGAAGC 1299 Query 14540 AACAACATTAACCT----TCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGG 14595 |||||||| | || ||| || || |||| |||||||| || || |||||| Sbjct 1298 AACAACATCCATCTGTTGTCTCCAAACG----GTCAGTTTGGTACTCGACTAGCGGGTGG 1243 Query 14596 TAAGGATGCTTCTCAGACGAGGTACATTTTCACAAAACTTACCAAGGAGGCTCGCAAGA- 14654 ||| ||||| | | | | ||||| || || || || | || | ||| || || Sbjct 1242 TAAAGATGCAGCATCGCCTCGTTACATCTTTACGAACCT---CGAGCAA-CTCACACGAC 1187 Query 14655 ---TCTTTGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGATGATGGACGCTCCA 14711 |||| || |||| |||| || | | | | || | ||||||||||||| || | Sbjct 1186 GCATCTTCGACCCTCTGGATAACGACAACTTGACATATCTCGACGATGATGGACAGTCGA 1127 Query 14712 TTGAACCAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAGGGTA 14771 |||| || || | || | || | | ||||||| ||||| ||||| |||||||| Sbjct 1126 TTGAGCCTGAATGGTATGTTCCGATCATTCCAATGGCACTCGTCAATGGTGGCGAGGGTA 1067 Query 14772 TCGGTACGGGTT 14783 |||| ||||||| Sbjct 1066 TCGGCACGGGTT 1055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596401367372800