Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq3232 145 1e-29 seq16108 132 6e-26 seq2762 127 3e-24 seq299 123 3e-23 >seq3232 Length=3179 Score = 145 bits (160), Expect = 1e-29 Identities = 454/697 (65%), Gaps = 16/697 (2%) Strand=Plus/Plus Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTA 195361 |||||||||||| | || || || ||||| || || ||||| ||| | | | | || Sbjct 636 ATTGGTATCGATCTTGGTACGACGTACTCGTGCGTCGGTGTCTGGAAGGACGGCCAGGTC 695 Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421 ||||| || | || | | || ||||| || || || |||| || ||||| | || Sbjct 696 GAGATCATTGCCAACAGCGAGGGTAACCGCACGACGCCGTCGTGGGTCGCCTTCAACGAG 755 Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481 | || |||||| |||| || ||||| || | ||| | || |||||| || || Sbjct 756 ACGGAGCGTCTCATTGGTGAGGCCGCCAAGATCCAGGCCGCCTCGAACCCGTCGAACACG 815 Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGAT 195541 ||||| || || |||||| | ||||||||||| || ||||| ||| ||| | | ||| Sbjct 816 GTCTTCGATGCCAAGCGTATCATTGGTCGCAACTTCTCGGACGAGATCGTCAAGAAGGAT 875 Query 195542 ATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTG-GCTG---ATAAGCCTATGATTAA 195597 | | ||| | | | || | || || | | | || | ||| | | ||| | Sbjct 876 GCCACGCACTTCCCGT-TCAA---GATCAAGGAGGGCGATGACAACAAGGTTCTCATTGA 931 Query 195598 TGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTT 195657 ||||| || | |||||| || || | || || || || ||||| |||||| | Sbjct 932 GGTTGAGTTCAAGGGTGAGGCCAAGAGCTTCACGCCGGAGGAGATCTCGTCGATGGTGCT 991 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 | ||||||||||| || || | | | | || | | | || | || || || Sbjct 992 CACGCGCATGAAGGAGACGGCTGAGGCCTACCTTGGCCAGCCGATCAACCAGGCCGTCGT 1051 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 || || || |||||||||| || || || ||| |||| |||||||| | ||| || Sbjct 1052 CACGGTCCCGGCTTACTTCAACGACCAGCAGCGTCAGTCGACCAAGGACGCCGGTGCCAT 1111 Query 195778 TGCGGGTCTAAACTGTC-TTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATG 195836 ||| || || || ||| | || ||||| || || || || ||||| | || || | Sbjct 1112 TGCTGGCCTCGAC-GTCAAGCGTATCATCAACGAGCCGACGGCCGCTGCCCTCGCGTACG 1170 Query 195837 GTCTGGACAAGAACAAGGACGAAGATAA------AAATGTATTGATCTTTGATCTCGGTG 195890 |||| |||| ||| | | | || || || | ||||| ||||| |||| Sbjct 1171 GTCTCGACACCAACGCTGGTGCCGGCAAGGGCGTGAACGTGCTCATCTTCGATCTTGGTG 1230 Query 195891 GTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTA 195950 | ||||| || ||||| || | |||| ||||| || || ||||| || ||| | | Sbjct 1231 GCGGTACCTTCGATGTGTCGATCCTCAGCATTGAGAACGGCATCTTCGAGGTCAAGTCGA 1290 Query 195951 CTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | | ||||| || || || |||||||| || ||||| Sbjct 1291 CGGGCGGTGACACGCACCTTGGTGGTGAGGACTTCGA 1327 >seq16108 Length=461 Score = 132 bits (146), Expect = 6e-26 Identities = 308/462 (67%), Gaps = 2/462 (0%) Strand=Plus/Minus Query 195374 AATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAATGAACGTCTC 195433 || ||||| || ||||| || || || |||||||| || || || || | || ||||| Sbjct 461 AACGACCAGGGCAACCGCACGACGCCGTCGTACGTGGCGTTCACGGACACGGAGCGTCTG 402 Query 195434 GTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCG 195493 | || || || || || || ||| || |||||| | | |||||| ||||| || || Sbjct 401 ATCGGCGACGCTGCGAAGAACCAGGTCGCGATGAACGCCAGCAATACGGTCTTCGATGCC 342 Query 195494 AAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGG 195553 ||||| || || ||||||||||| ||||| || || || || ||| ||||| Sbjct 341 AAGCGCCTGATCGGTCGCAAGTTCTCGGACGCAGTCGTGCAGTCGGACATGAAGCACTGG 282 Query 195554 TCTTATGAAGTTGTTC-CCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACGG 195612 | | | ||| || || |||| || |||||||| ||| || || || | || Sbjct 281 CCGT-TCAAGGTGGTCGCCGGGTCGGGAGATAAGCCGCAGATCGTCGTCGAGTTCAAGGG 223 Query 195613 TGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGA 195672 ||| | || || ||||| || || ||||| |||||| ||| ||||||||||| Sbjct 222 GGAGCACAAGACGTTCCAGCCCGAGGAGATCTCGTCCATGGTGCTGACCAAGATGAAGGA 163 Query 195673 GACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTA 195732 || || || | | | |||| | || ||||| | || || | || || || || || Sbjct 162 GATCGCCGAGGCGTACCTGGGCACGACGGTGAAGAACGCGGTGATCACGGTGCCGGCGTA 103 Query 195733 CTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTG 195792 ||| | || || || || ||||| || ||||| | | || || ||||| ||| Sbjct 102 CTTTAACGACTCCCAGCGTCAGGCAACGCGAGACGCCGGCACGATCGCTGGTCTCAACGT 43 Query 195793 TCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTA 195834 || | || ||||| || ||||| || || || || || || Sbjct 42 GCTACGCATCATCAACGAGCCAACGGCTGCAGCGATCGCGTA 1 >seq2762 Length=3590 Score = 127 bits (140), Expect = 3e-24 Identities = 319/478 (67%), Gaps = 9/478 (2%) Strand=Plus/Minus Query 196374 TCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTG 196433 ||||||| ||||| || || || || ||||| || || |||| || ||| || |||| Sbjct 2180 TCAACCCCGATGAGGCTGTCGCGTACGGTGCTGCTGTCCAGGGTGGTATCCTT---GGTG 2124 Query 196434 TTGACAATAATAACGT--CCAAGATC-TTCTGCTACTTGATGTTGCACCCGTATCCCTGG 196490 ||| | | | || ||||| | ||||||| ||||||||| || | || || | Sbjct 2123 GTGAGCAGGACGATGTGACCAAGGACATTCTGCTCATTGATGTTGTGCCTCTCTCGCTCG 2064 Query 196491 GTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGA 196550 || |||| || | || ||||| ||||| || | || | | ||||| || || | Sbjct 2063 GTATTGAGACGGTCGGCGGTGTCATGACGAAGCTCATCAACCGTAACACGGTCATCCCCA 2004 Query 196551 CTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAG 196610 | |||||| || || || || || || || || || | ||| | || || | Sbjct 2003 CGAAGAAGTCGCAGACGTTCTCGACCTACCAGGACAACCAGCCCGCTGTGCTGATCCAGG 1944 Query 196611 TATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTTG 196669 | | || || || || | || || | ||||| |||| ||| || || | ||||| | Sbjct 1943 TGTTCGAGGGTGAGCG-TGCCATGACTAAGGACAACCGTCTGCTCGGCAAGTTCGAGCTC 1885 Query 196670 ACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGAC 196729 ||||| | || | || || | || || || |||||| | || ||||| | ||| Sbjct 1884 ACGGGTCTCCCGCCGGCTCCGCGTGGCGTGCCTCAGATTGAGGTCACGTTCGAGGTCGAC 1825 Query 196730 GCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATT 196789 || || || ||||| | ||| | ||||||||||||| ||||||| | || ||||| Sbjct 1824 GCCAACGGTATTCTCCAGGTCGCTGCTGAGGACAAGGGCACTGGCAAGGCCGAGAAGATC 1765 Query 196790 GTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAG 196847 |||||| ||| ||||| || || || ||||||| ||||| || |||| ||||| Sbjct 1764 ACGATTACGGCTGAGAAGGGTCGCCTGTCCCAGGAGGAGATTGACCGCATGG-TCAAG 1708 >seq299 Length=10762 Score = 123 bits (136), Expect = 3e-23 Identities = 236/344 (69%), Gaps = 8/344 (2%) Strand=Plus/Plus Query 195647 TCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAA 195706 || |||||| | | |||||||||||||| || || ||| | || || | || | Sbjct 7346 TCCATGGTGCTCACCAAGATGAAGGAGACCGCCGACAGCTTCCTCGGCAAGTCGGTCACG 7405 Query 195707 GATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGAC 195766 | || || || || || || || ||||||| || || || || ||||| || |||||| Sbjct 7406 CAGGCTGTCGTCACGGTCCCGGCCTACTTCAACGACTCGCAGCGCCAGGCCACCAAGGAC 7465 Query 195767 GCTGCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGC 195825 |||| | ||||| ||||| | ||| || | || ||||| || || || || ||||| Sbjct 7466 GCTGGTAAGATTGCCGGTCTGGA-TGTGCTCCGTATCATCAACGAGCCGACCGCCGCTGC 7524 Query 195826 AATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCT 195885 | || || || || |||||| | | | | ||| | | | |||| ||||| Sbjct 7525 GCTCGCGTACGGCCTCGACAAGGCCGATGGC-AAGGTCA-----TCGCCGTCTTCGATCT 7578 Query 195886 CGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAA 195945 |||||| ||||| || |||||||| | ||| | || |||||| | ||||| || || Sbjct 7579 CGGTGGCGGTACCTTCGATGTCTCGATCCTCGAGATCTCGGGTGGTGTCTTCGAGGTCAA 7638 Query 195946 GGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATG 195989 ||| || ||||| || | || |||||||| |||||||||| Sbjct 7639 GGCCACGAACGGTGACACGCTCCTCGGTGGTGAGGATTTCGATG 7682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657676882803200