Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1862 578 4e-160 seq1079 143 3e-29 seq5064 125 7e-24 >seq1862 Length=4717 Score = 578 bits (640), Expect = 4e-160 Identities = 1244/1834 (68%), Gaps = 43/1834 (2%) Strand=Plus/Minus Query 147952 TGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAGTCGTGCACCGACG 148011 ||||||| |||||||| ||||||||||| ||| | ||| ||||| ||||| |||| Sbjct 4025 TGCGCAGGTAGTACATACCCGTCTTGAGACCCTTCTTCCACGCGTAAAAGTGCATGGACG 3966 Query 148012 ACATGAGCGTGTACGTCGGGTGCGGCACAAACAGATTAAACGACTGGCTCTGGTCAATGA 148071 || || |||||| | || | || || | ||||||||||||| ||| Sbjct 3965 TCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATGT 3906 Query 148072 ACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTATCTTCATCTCCCAGGCCGTCT 148131 | ||||| ||||| |||||||| || | | ||| ||| |||||||| |||||| Sbjct 3905 AGGCGCCGCGGTCGGCGGCCATATCGAGCACAGCCTTCTGCTTGATCTCCCACACCGTCT 3846 Query 148132 TGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTGCACCGAGCCGCGGT-GC 148190 ||||| | ||| | ||| || || || | | |||||| |||||| ||| | Sbjct 3845 TGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACGTTCTGCACTGAGCCGTGGTCGT 3786 Query 148191 GCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTCGATCAGGTCATCGATC 148250 ||| | |||| || |||| ||| ||| | | | ||||||||| || || | ||| Sbjct 3785 GCAGGA-TCTGGTTACGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATC 3727 Query 148251 AGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTC 148310 || |||| ||||| | | |||||||| || |||||||| || |||| |||| || Sbjct 3726 AGGTACTTGTTCACGATCGTGAACTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGGTC 3667 Query 148311 GTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATG 148370 || ||||| || | ||||||||||||||| | ||||||||||| | ||||| ||||| Sbjct 3666 GTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTAGACGCCGTCGGCATC 3607 Query 148371 TACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCC 148430 ||| | ||||||||||||||||| ||| | | || ||| || || ||| Sbjct 3606 GGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCGACGCTGGCCTTGAGCGCGGCC 3547 Query 148431 CAGTCCCAGAG--CGG-CGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGG 148487 ||||||||||| ||| || ||| || ||| ||||||||||||||| | ||||| | Sbjct 3546 CAGTCCCAGAGGCCGGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAGATGCCCTTG 3487 Query 148488 CTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTC 148547 || | || ||||||||| | |||||| |||||| || || || || || | Sbjct 3486 CTCACAGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTTGCGAGCTC-CATCGA 3428 Query 148548 G-CCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGA 148606 | |||| | ||||||| |||| | ||||||| || | | |||||||| ||| | | Sbjct 3427 GGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCT-CGCGGGCCT 3369 Query 148607 C-TCGCTTTCGTACGGCATA-CGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCC 148664 | ||||| || ||| | || | || | | ||||| || || || ||||| ||||| Sbjct 3368 CGTCGCTCTCAAACG-CGTAGCCCATGAGGATGAACGCATCCGCGAGACCCTGCACGCCG 3310 Query 148665 ACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAG---CGGATAGTGG 148721 | ||| || || ||||| | |||| ||| || |||| | ||| |||| | Sbjct 3309 ATGCCGATCGGGCGGTGGCGCAGGTTGCTT---CGCTCGGCCTCGGGGATCGGGTAGTAG 3253 Query 148722 TTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAAT 148781 ||| |||||||| ||||| || |||||| || ||||| || || | |||| Sbjct 3252 TTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGTCGTACAGCTTC 3193 Query 148782 TCAAAATCGTA---CTTGTCATC--TACGATGCATCGGTTCACGGCGATAGAGGCTAGAT 148836 | || ||| | |||||| || | | | ||| || ||||| || || || | Sbjct 3192 TTGAAGTCGAAGGTCTTGTCGTCGTTCACAAACTTCGA--CAGCGCGATGGACGCGAGGT 3135 Query 148837 TGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGC 148896 ||||||| || ||| || || | ||||||| | | ||| ||| || ||||| Sbjct 3134 TGCACACCGCGACCTCGTCGGGCGACGTGTACTCGAGCACCTCACAGCAGAGGTTGCTCG 3075 Query 148897 ATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCA 148956 | ||| ||| | ||||| || || ||||| |||||||| |||||||||||||| Sbjct 3074 AGCGAATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCA 3015 Query 148957 TGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCCTGCG 149013 ||||||| ||| || || | ||||| || | || ||||| || | ||||| Sbjct 3014 TGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTG---CTGCG 2958 Query 149014 CGCGCA-CTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAAC 149072 |||| | | | ||| || ||| ||||| ||||||| |||||| ||||||| Sbjct 2957 CGCGGATCGTCTTGCGCGC-GCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAAC 2899 Query 149073 GCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACG 149132 | || || | || |||||| || || || |||||| | || |||| || Sbjct 2898 TCGTCACCCCACGTCGTGTAGAGACCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCG 2839 Query 149133 CCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTC- 149191 |||| || | ||||||||||| || |||||||| | ||| | |||||| | || || Sbjct 2838 CCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAATAGATCA 2779 Query 149192 -GCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGT 149250 |||||| ||||| ||| ||| ||| |||| ||| | ||| |||| Sbjct 2778 CGCGCGCGGTGCAGC--TCGTTGCCGTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGT 2721 Query 149251 CCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTGCCGCC---CTGGT 149307 | |||||||||||||| | |||| ||||| || |||||||||||||||||| ||| | Sbjct 2720 CGGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGAT 2661 Query 149308 CGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGC 149367 | || | ||| || ||| ||| ||||| || | ||| || | | ||| | | | || Sbjct 2660 CCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGC 2601 Query 149368 CGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGAT 149425 |||| || | ||| ||| | ||||| | | ||||||||| |||| ||||| Sbjct 2600 CGTTTGTGCCACGGATGTACGAGTTGGTCGCGC--GGATGTTGTGCACGCTGACACCGAT 2543 Query 149426 GCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGAT 149485 ||||||| | |||| |||||| ||||| | |||||| |||||||| ||||| Sbjct 2542 GCCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATGCCTTCGAT 2483 Query 149486 GCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGC 149545 |||| |||||||| ||||| |||||||| ||| ||||| | |||||||||| Sbjct 2482 CGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGAGGCGTGCCGGC 2423 Query 149546 CGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTC 149605 ||||| || || | ||||| || || | | || ||| |||||||| ||| Sbjct 2422 GTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTC 2363 Query 149606 GAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTG 149665 |||| || ||| ||||||| |||||||| | |||||||||| | ||| ||||| Sbjct 2362 GAGCGCGGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGAATCATCTGCTG 2303 Query 149666 CGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGTCTTGTA 149725 ||| ||||| || || ||| || | || | ||| || || || |||||| | Sbjct 2302 CGGGCGCTCAGCGACCTTGCCACCGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAA 2243 Query 149726 GCCAAAGTACTTGTAGTCAAAGTCGCGGCCGTGG 149759 ||||||||| | ||| |||||||||||| ||||| Sbjct 2242 GCCAAAGTAGTCGTACTCAAAGTCGCGGTCGTGG 2209 >seq1079 Length=6315 Score = 143 bits (158), Expect = 3e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || | |||| |||||||||||||||||| Sbjct 973 GTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 914 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || |||||||| || |||||||| || |||||||| |||||| |||||| Sbjct 913 GCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTCTGCTTG 854 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| |||| | ||||| ||||||| |||| || |||||||||||||| Sbjct 853 ACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAGCGTGATCGTCTTGCCGGTCAGAGTC 794 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 793 TTGACGAAGATCTGCAT 777 >seq5064 Length=2045 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || | |||| |||||||||||||||||| Sbjct 6 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 65 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || |||||||| || |||||||| || |||||||| |||||| |||||| Sbjct 66 GCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTCTGCTTG 125 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| | || | |||||| ||||| | ||||| || || || || || || Sbjct 126 ACATTGTCAATGCTATCCGAGGGCTCGACGTCCAGGGTGATCGTCTTCCCCGTGAGGGTC 185 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 186 TTCACGAAGATCTGCAT 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483284475334400