Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1862 262 4e-65 >seq1862 Length=4717 Score = 262 bits (290), Expect = 4e-65 Identities = 1192/1843 (65%), Gaps = 59/1843 (3%) Strand=Plus/Minus Query 146585 TGCGCAAATAATACATGCCCGTTTTGAGGCCACATCG-CCACGAGTGATTGTGAATCGAA 146643 |||||| || ||||| ||||| ||||| || | || ||||| || | ||| || || Sbjct 4025 TGCGCAGGTAGTACATACCCGTCTTGAGACC-CTTCTTCCACGCGTAAAAGTGCATGGAC 3967 Query 146644 GTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGGCTTTGATCTATG 146703 |||| || | |||||||||||| | | | || | ||| ||||| || ||| Sbjct 3966 GTCAGCTTGCTGATCGTCGGCTCCGCGATGTGCACGTTGAGCGACTGGCTCTGGCAGATG 3907 Query 146704 AAAGCGTTGCGGTCGGCCGCCATCTCAATCAT-GCGTTTTGTCTTCATTTCCCAAGCGGT 146762 | ||| ||||||||| ||||| || | || || || || ||| || ||||| | || Sbjct 3906 TAGGCGCCGCGGTCGGCGGCCATATCGAGCACAGCCTTCTG-CTTGATCTCCCACACCGT 3848 Query 146763 TTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAATAGAGCCCTTGT- 146821 |||||| | |||| ||| ||| || || | | ||| || | ||||| | || Sbjct 3847 CTTGTACTTCTCCTTCACGGCATCCGGGATCACGCGCACGTTCTGCACTGAGCCGTGGTC 3788 Query 146822 GCGCAAAAATAGTGTTTCGTATTTCGGGCGTGTAAAGGTTTAGTTTAATGAGGTCATCAA 146881 | ||| | | ||| || | |||||||| | | | || | ||||| || | | Sbjct 3787 GTGCAGGATCTG-GTTACGCACCTCGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCA 3729 Query 146882 TTAAATACTGATTGACCA-CTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTG 146940 | | |||| || || | | |||| |||||| || ||||| || | | |||| ||| Sbjct 3728 TCAGGTACTTGTTCACGATCGTGAA-CTCGCCTGCAAGCACGCGGCGGTTGTACATGTTG 3670 Query 146941 CTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGC 147000 | ||||| ||||| | ||||| || ||||| | || || || || | || || ||| Sbjct 3669 GTCGTGAACGGCTCGATCGACTCGTTGTTGCCGAGGATCTGCGCGGTAGACGCCGTCGGC 3610 Query 147001 ATGTACGCCACCAACAATGAATTTCGCAGACCGTAC-GCACGGATGTTGTCCTTCAAAGT 147059 || ||| | || || || || |||| |||||| || || | | || |||| | | Sbjct 3609 ATCGGCGCGAGCAGCAGCGAGTTGCGCACGCCGTACTGCGCG-ACGCTGGCCTTGAGCGC 3551 Query 147060 TTGCCAGTCCCACATC---GACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCC 147116 ||||||||| | |||| ||||| ||| ||||||||||||||||| | || Sbjct 3550 GGCCCAGTCCCAGAGGCCGGACGTCGGCGTGACGCCCCACATGTCGTACTGGAAGATGCC 3491 Query 147117 TCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACA 147176 || | || ||| || | | | ||| |||| || || | || || Sbjct 3490 CTTGCTCACAGGTGAGCCCTCGTAGCTGGCGTACGGGCCGTGCTCCTTTGCGAGCTC-CA 3432 Query 147177 GCTTG-CCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCG 147235 | | |||| | ||| || |||| | || ||| ||| | ||||| || || | Sbjct 3431 TCGAGGCCTCCATCGCGCCGAAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGG 3372 Query 147236 CTTCTTCGCTCTCGTAAGGCATA-CGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATA 147294 | || |||||||| || || || | || || | || ||||| || | |||||| | Sbjct 3371 CCTCGTCGCTCTCA-AACGCGTAGCCCATGAGGATGAACGCATCCGCGAGACCCTGCACG 3313 Query 147295 CCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT-ATGGGATAGTG 147353 |||| |||||| || || || |||||| |||| || |||| || || |||| Sbjct 3312 CCGATGCCGATCGGGCGGTGGCGCAGGTTGCTTCGCTCGGC-CTCGGGGATCGGGTAGTA 3254 Query 147354 GTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTT 147413 |||| || || | |||||||||||| ||| || || || || || | || || Sbjct 3253 GTTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGTCGTACAGCTT 3194 Query 147414 CTCGAAATCATAAGTCCCGTCTTCGA-CACGTACGCATTGGTTCACGGCGATAGACGCCA 147472 || ||| || | ||| ||| ||| ||| || || | || ||||| ||||| | Sbjct 3193 CTTGAAGTCGAAGGTCTTGTCGTCGTTCACAAAC---TTCGA-CAGCGCGATGGACGCGA 3138 Query 147473 GATTGCAGACGGCCGTCTCTTCGG-CGTCGCTGTACTGCACGATTTCGGCGCACAGGTTG 147531 | ||||| || || ||| |||| || || |||||| | | || ||| |||||| Sbjct 3137 GGTTGCACACCGCGACCTCGTCGGGCGACG-TGTACTCGAGCACCTCACAGCAGAGGTTG 3079 Query 147532 CTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAG 147591 || | || || | || ||||| || || || ||||||| ||| ||| | Sbjct 3078 CTCGAGCGAATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTAC 3019 Query 147592 AGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATA---AACCTATGCAGGTCC 147648 ||||||||||| ||| ||||||| |||| || | ||| |||| || | | Sbjct 3018 AGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTG---C 2962 Query 147649 TGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCA 147708 ||||| || | | || || |||||||||| |||||| | | ||||| | ||| Sbjct 2961 TGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCG 2902 Query 147709 AACTCGTCGCCGTAGCAATCG-GCA-AGGCCGGGACACTGATGCGGACACATCAGCGACC 147766 |||||||| || | ||| | | || || || || | ||| || | ||| || Sbjct 2901 AACTCGTCACCCCACG--TCGTGTAGAGACCCGGCGCCTCGTTCGGGCAGAACAGGCTCC 2844 Query 147767 ACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAA 147826 || | ||| || | |||||| ||| || ||||| || | ||||| |||||| | | Sbjct 2843 ACTCGCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAATA 2784 Query 147827 GATC--GCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCA-CGCTAT 147883 |||| |||||| |||| |||| ||| ||| || | | || | | | | Sbjct 2783 GATCACGCGCGCGGTGCAG--CTCGTTGCCGTGGTTCTTCTTGAGGTCGAGGAACTCGA- 2727 Query 147884 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTTCCG---C 147940 |||||||||||||||| || || | || | || | || || || ||||| ||| | Sbjct 2726 AGATGTCGGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCAC 2667 Query 147941 CCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCG 148000 |||| || |||| ||| || ||| ||| |||||||||| |||||| | |||||| ||| Sbjct 2666 CCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCG 2607 Query 148001 CAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGC 148060 | |||||| ||| | ||| | | | || || | | ||||||| | || | Sbjct 2606 ACGAGCCGTTTGTGCCACGGATGTACGAGTTGGTCGCGCGGATGTTGTGCACGCTGACAC 2547 Query 148061 CAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAA---TGTCGTGTAGATGC 148117 | ||||||||| | |||| || ||| ||||| | || | |||| ||||||| Sbjct 2546 CGATGCCGCCGGCCCACTTGGAGATGCAGGCGCACT-GCTTGAGCGTGTC--ATAGATGC 2490 Query 148118 CGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCG 148177 | ||||| ||||| || | | | |||| || ||||| ||| ||||| ||| Sbjct 2489 CTTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGAGGCG 2430 Query 148178 TTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCAT-CATGCGA 148236 | || || ||| || || || |||||||||| || || |||| ||| | || Sbjct 2429 TGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCG- 2371 Query 148237 TACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGC 148296 |||||||| | ||| | |||||||| | ||| ||||| | |||||||||| | | Sbjct 2370 TACGTCTCGAGCGCGGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGAATC 2311 Query 148297 ATGTGCTGTGGTCGTTCGGC-AACTTG--ATTGTTGATCTTGAGAAGATATCCATTTTCG 148353 || ||||| || || || || | |||| | | | | || || || || ||| Sbjct 2310 ATCTGCTGCGGGCGCTCAGCGACCTTGCCACCGACGCGC---AGGAGGTACGACTTCTCG 2254 Query 148354 AGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGT 148396 || || ||| | |||||||| | ||| ||||| || | |||| Sbjct 2253 AGCGTCTTGAAGCCAAAGTAGTCGTACTCAAAGTCGCGGTCGT 2211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476476795641600