Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1862 147 2e-30 seq1079 127 2e-24 seq5064 104 2e-17 seq4761 86.0 6e-12 >seq1862 Length=4717 Score = 147 bits (162), Expect = 2e-30 Identities = 915/1435 (64%), Gaps = 67/1435 (5%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 || || ||| | ||||||| || || ||||| ||| | ||||| |||||||| | Sbjct 2303 CAGCAGATGATTCTGCGCGTCGCTGTCGGCATCCACAAGCATGACATCGACGCCGCGCTC 2362 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTT----ACGCACGCTTCGCCCACCATGTT 7679 || |||||| | ||||| | || || || |||||||| |||| || |||| Sbjct 2363 GAGACGTACGAGTACATGTC---GCAA-AGCTTCTTCACGCACGCGACGCCGACGCTGTT 2418 Query 7680 TGCCGCGGGCACAAA-CGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAG 7738 ||| ||||| ||| || || |||| ||||| || |||| ||||| || | Sbjct 2419 CAACGCCGGCACGCCTCGC-CCGCAGCTGTCGTCGTGCTTCCTGCTCGCCATGAAGGACG 2477 Query 7739 ACAGCATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCG 7798 || ||||| ||||| || ||||||| | |||||| || ||||| | | || Sbjct 2478 ACTCGATCGAAGGCATCTATGACACGCTCAAGCAGTGCGCCTGCATCTCCAAGTGGGCCG 2537 Query 7799 GCGGAATAGGTCTGAACGTAAACGACGTGCGCGC---CAACG-GTAGCCGCATC-GTGTC 7853 |||| || ||| | | ||| || || | ||||| |||| ||| |||| ||| | Sbjct 2538 GCGGCATCGGTGTCAGCGTGCACAACATCCGCGCGACCAACTCGTA----CATCCGTGGC 2593 Query 7854 CACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCG 7913 || ||||| | | ||| | | ||||||| ||||||||||||| || ||| ||| Sbjct 2594 -ACAAACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTTCAACGACACGGCGCG 2652 Query 7914 ACATGTAGACCAG---GGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTG 7970 |||| || ||| || || |||||||| ||| | || || ||| | |||||||| Sbjct 2653 TTATGTGGATCAGGGTGGCGGCAAGCGCAAGGGCTCGTTCGCGATGTATCTCGAGCCGTG 2712 Query 7971 GCACGCGGACATTTACGCAGTGCTAAATCT-GCGTCGCAACATGGGTTGCGAAGA-CAGC 8028 |||||| ||||| | || | || | || | | | || | || | || | || Sbjct 2713 GCACGCCGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACG----GCAACGAGCTGC 2768 Query 8029 AAAGCGCGC--GATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTC 8086 | |||||| |||||||||| || ||||| | |||||||| || |||| ||||||| Sbjct 2769 ACCGCGCGCGTGATCTATTCTACGCGATGTGGATTCCCGATCTCTTCATGAAGCGCGTTG 2828 Query 8087 ATTTCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGCCC---TTTATTAAAAAACG 8143 | | ||| | ||| || | || ||||| || || | | || | ||| Sbjct 2829 AGGCCAACGGCGAGTGGAGCCTGTTCTG-CCCGAACGAGGCGCCGGGTCTCTACACGACG 2887 Query 8144 TTTACGGTTCAAAATTTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGC 8203 | ||| | || || ||||| | || ||||| | ||| ||| || || || Sbjct 2888 --TGGGGTGACGAGTTCGAGGCGCTGTACCACCAGTACGAGCGCGAGGGC-CG--CGCGC 2942 Query 8204 GGCAAGTGAAAGCGCGCG-ACCTGCACCG---CGCCATTATCGAATGTCAAAACGAAACC 8259 ||||| | |||||| | | || | | ||| || |||| | || | ||| || Sbjct 2943 -GCAAGACGATCCGCGCGCAGCAGCTCTGGTTCGCGATCCTCGAGTCGCAGATCGAGACG 3001 Query 8260 GGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTG 8319 || | |||||||||||||||||| ||| | |||||| ||| || || ||| | Sbjct 3002 GGCACGCCGTACATGCTGTACAAGGACTCGTGCAACCGCAAGTCGAACCAGCAGAACCTC 3061 Query 8320 GGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAA 8379 ||||| ||| | | ||||| || ||| ||| | | |||||| |||||||||| Sbjct 3062 GGCACGATTCGCTCGAGCAACCTCTGCTGTGAGGTGCTCGAGTACACGTCGCCCGACGAG 3121 Query 8380 GTGGCCGTTTGCAATCTAGCG----TCGGTGTGTTTAAACGCGTTCGTTGATCGACGCTC 8435 || || || ||||| || ||| ||| ||| || ||| | ||| ||||| Sbjct 3122 GTCGCGGTGTGCAACCTCGCGTCCATCGCGCTGTCGAA----GTTTG-TGAACGACG--A 3174 Query 8436 AAACACTTACGACTTTGAACAATTGAAAAACGCCGTGCAAGTGACGGTA--CGCAATTTA 8493 || || | |||||| | | || | || | |||| | || | ||||| | Sbjct 3175 CAAGACCTTCGACTTCAAGAAGCTGTACGACATC-ACCAAG-GTCGTCACGCGCAACCTC 3232 Query 8494 GATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAG-CGCGCGTATCGAACATGCG 8552 | |||| || |||| | || || | || | || ||| | | ||| |||| Sbjct 3233 AACAAGGTCATCGACATCAACTACTACCCGATCCCCGAGGCCGAGCGAAGC-AACCTGCG 3291 Query 8553 CCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCT 8612 |||| | || | ||| | |||||||| ||||| || || ||||| | | || || Sbjct 3292 CCACCGCCCGATCGGCATCGGCGTGCAGGGTCTCGCGGATGCGTTCATCCTCATGGGCTA 3351 Query 8613 CCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTA 8672 | | | || ||| | || || ||| |||||||| || || || ||| |||| | Sbjct 3352 CGCGTTTGAGAGCGACGAGGCCCGCGAGCTCAACAAGAACATCTTCGAGACGCTGTACTT 3411 Query 8673 CGGCGCATTAGAAGCC-AGCTGTCAACTTGCCCGAGAATTGGGCACGTACGAATCGTACG 8731 |||||| | || ||| | || | || || || ||| |||||| |||| Sbjct 3412 CGGCGCGATGGAGGCCTCGATG-GAGCTCGCAAAGGAGCACGGCCCGTACGCCAGCTACG 3470 Query 8732 CGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGTCACGCCCACCT 8791 |||| |||| ||| || || || || |||||||||||| |||||||| || | Sbjct 3471 AGGGCTCACCTGTGAGCAAGGGCATCTTCCAGTACGACATGTGGGGCGTCACGCCGACGT 3530 Query 8792 C---TTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATT 8848 | | ||| | ||| || | || || | || || | ||| ||||||| | Sbjct 3531 CCGGCCTCTGGGACTGGGCCGCGCTCAAGGCCAGCGTCGCGCAGTACGGCGTGCGCAACT 3590 Query 8849 CGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAAT 8908 ||||| || | || ||||| || || | || || || || | || |||||||| | Sbjct 3591 CGCTGCTGCTCGCGCCGATGCCGACGGCGTCTACCGCGCAGATCCTCGGCAACAACGAGT 3650 Query 8909 CCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTT 8963 | | ||||||||||| | |||| ||||| | || ||| | || ||||| || Sbjct 3651 CGATCGAGCCGTTCACGACCAACATGTACAACCGCCGCGTGCTTGCAGGCGAGTT 3705 >seq1079 Length=6315 Score = 127 bits (140), Expect = 2e-24 Identities = 163/222 (73%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||||||||| ||||| || ||||| || ||||||||||| | ||| | Sbjct 994 AGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGG 935 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| |||||||| ||||| || || |||| ||||||||||| || || || || || Sbjct 934 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCC 875 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || ||||| || ||||| |||| || | || |||||||| || Sbjct 874 TTGTCCTGGATCTTCTGCTTGACATTGT-CAATGCTGTCCGAAGGCTCGACGTCGAGCGT 816 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| | ||| || ||||| || ||||| || Sbjct 815 GATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTT 774 >seq5064 Length=2045 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 134514 AGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTG 134573 ||||| || ||||| || ||||||||||| || ||| | ||| |||||||| ||| Sbjct 3 AGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGGCCGTCCTCGAGCTGCTTG 62 Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || || || |||| ||||||||||| || || || || || || || || || || || Sbjct 63 CCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTCTGC 122 Query 134634 TTGACCGCGTCCAATG-TGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAA 134692 ||||| || ||||| | || || | || ||||| || || || || || || || | Sbjct 123 TTGACATTGT-CAATGCTATCCGAGGGCTCGACGTCCAGGGTGATCGTCTTCCCCGTGAG 181 Query 134693 AGTTTTAACGAAAATTTGCATTTT 134716 || || ||||| || |||||||| Sbjct 182 GGTCTTCACGAAGATCTGCATTTT 205 >seq4761 Length=2180 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||||||||| ||||| || ||||| || ||||||||||| || ||| | Sbjct 1540 AGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGG 1599 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCT 134612 ||| |||||||| ||||| || || |||| ||||||||||| || || || ||| Sbjct 1600 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCT 1656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505255877651200