Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1862 235 7e-57 seq957 111 2e-19 >seq1862 Length=4717 Score = 235 bits (260), Expect = 7e-57 Identities = 579/862 (67%), Gaps = 17/862 (2%) Strand=Plus/Minus Query 111316 AATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTA 111375 |||||| || | |||| ||||| ||| |||||||| |||||||| |||||||| Sbjct 3070 AATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTA 3011 Query 111376 GGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCG-GCTGGT 111433 ||||| |||||||| |||| || | ||| || || ||| | | | ||| || | | Sbjct 3010 CGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGAT 2951 Query 111434 ACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCA 111493 | ||| || || ||||| |||||||| ||| || || || ||||| ||| Sbjct 2950 CGTCTTGCGC--GCGCGGCCCTCGCGCTCGTACTGGTGGTACAGCGCCTCGAACTCGTCA 2893 Query 111494 CCCACCG-CGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACC 111552 ||| || ||| | ||||||| || |||| || || ||||| || ||| | || Sbjct 2892 CCCCACGTCGT-GTAGAGACCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTT 2834 Query 111553 TTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTA-C 111611 ||||||| ||||||||||| || || |||||||||| | | || ||||| | | Sbjct 2833 GGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCGTAGAATAGATCACGCGC 2774 Query 111612 ACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC-TCAAGGAACTCCATGATATCCGCG 111670 | | || || ||| || ||||| || | | || |||||||| | ||| || ||| Sbjct 2773 GCGGTGCAGCT-CGTTGCCGTGGTTCT-TCTTGAGGTCGAGGAACTCGAAGATGTCGGCG 2716 Query 111671 TGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGCTTGATTTACA 111727 ||||| ||||| ||||| | |||| || ||||| || ||| || | |||| ||| Sbjct 2715 TGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCACA 2656 Query 111728 TAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTT 111787 || ||||| ||| |||| || ||||| ||||| || | | || | || || ||| Sbjct 2655 TAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTT 2596 Query 111788 GTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATACCCC 111845 || || || || ||||| || | || | | | || | | | || || || | Sbjct 2595 GTGCCACGGATGTACGAG--TTGGTCGCGCGGATGTTGTGCACGCTGACACCGATGCCGC 2538 Query 111846 CAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGT 111905 | |||||||| ||||| || |||| | | || || ||||||| || | ||| |||| Sbjct 2537 CGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAGATGCCTTCGATCGAGT 2478 Query 111906 CCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGA 111965 | ||||| |||||| |||||||| |||| |||||| | || || || || |||| Sbjct 2477 CGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGAGGCGTGCCGGCGTTGA 2418 Query 111966 AGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGA 112025 | || || || || ||||| |||| | | ||| ||||| | ||||| ||||| | Sbjct 2417 ACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTACTCGTACGTCTCGAGCG 2358 Query 112026 CAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGGGG 112085 | | || ||||| | | ||||||||||| ||||| |||| | ||| | ||| ||| Sbjct 2357 CGGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGAATCATCTGCTGCGGGC 2298 Query 112086 TTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGAGACCAA 112145 || || ||||| ||| || | || || |||||| || || |||| |||| Sbjct 2297 GCTCAGCGACCTTGCCACCGACGCGCAGGAGGTACGACTTCTCGAGCGTCTTGAAGCCAA 2238 Query 112146 AGTAACCAAAATCATAGTCCCG 112167 |||| | | ||| |||| || Sbjct 2237 AGTAGTCGTACTCAAAGTCGCG 2216 >seq957 Length=6759 Score = 111 bits (122), Expect = 2e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||||||||| || || || || || || || ||||||| || || ||||| || || Sbjct 6010 GTGGAGACCCTCGTCACGCGAGATGAGCTCGTTCGAGAAGCTGAGGCCAGGCATAAGGCC 5951 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | |||| |||||| || || ||||||||||| ||||| ||| Sbjct 5950 GCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAGAAGATGCCCTCGACAGC 5891 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAA-GGAGCGAGACTTTGCATCAAACCATTTCATTG 122848 || ||||| | | || |||||||| | ||| | | | || |||| || | | Sbjct 5890 AGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGC-GCGAGTCGCACCACTTGAGCG 5832 Query 122849 CCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 |||| | ||||||||||| | ||| || | || | |||||| Sbjct 5831 CCCAGTGCGCCTTCTTCTGCACACAAGGGATCGTCTCGATGGC 5789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627854894976000