Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1862 262 5e-65 seq957 181 1e-40 >seq1862 Length=4717 Score = 262 bits (290), Expect = 5e-65 Identities = 770/1163 (66%), Gaps = 44/1163 (4%) Strand=Plus/Minus Query 118484 GGCCTCGTCGGAATCAAACGCG-AGTCGGCACAAA-ATAAATACATCCGCGAGACCTTGG 118541 |||||||||| ||||||||| || | || | || || ||||||||||||| || Sbjct 3373 GGCCTCGTCGCTCTCAAACGCGTAGCC--CATGAGGATGAACGCATCCGCGAGACCCTGC 3316 Query 118542 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACG---GGA 118598 || |||| ||| || ||||| || | || || |||| | ||| ||| | || Sbjct 3315 ACGCCGATGCCGATCGGGCGGTGGCGCAGGTTG--CTTC-GCTCGGCCTCGGGGATCGGG 3259 Query 118599 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 118658 || | || | ||||| ||| | || || || ||||| ||||| ||||| || | Sbjct 3258 TAGTAGTTGATGTCGATGACCTTGTTGAGGTTGCGCGTGACGACCTTGGTGATGTCGTAC 3199 Query 118659 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 118718 ||||| | | | || || | | || || || ||| |||| | || ||||| ||| Sbjct 3198 AGCTTCTTGAAGTCGAAGGTCT---TGTCGTCGTTCACAAACTTCGACAGCGCGATGGAC 3142 Query 118719 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAG 118778 || || || ||||| | | ||| || |||||||| | | || ||| | | Sbjct 3141 GCGAGGTTGCACACCGCGACCTCGTCGGGCGACGTGTACTCGAGCACCTCACAGCAGAGG 3082 Query 118779 TTTGAACTCTT---AATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 118835 || ||| ||| ||||| | ||||| || || ||||| ||| |||| ||| Sbjct 3081 TTG---CTCGAGCGAATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGCACGAGTCC 3025 Query 118836 TTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACA 118895 ||||| |||||||| ||||| |||||||| | || |||| ||| || || ||||| Sbjct 3024 TTGTACAGCATGTACGGCGTGCCCGTCTCGATCTGCGACTCGAGGATCGCGAACCAGA-- 2967 Query 118896 TCGGCAGCTG-GCACAG-TGGCGTTG---GCTCGCCCCTCTTCCTCGTACTTTGTGTAGA 118950 || |||| || | | | | ||| || || ||||| |||||||| ||| | Sbjct 2966 ---GCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGCCCTCGCGCTCGTACTGGTGGTACA 2910 Query 118951 GGGCTTCAAACTCTTCACCC-ACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAG 119009 | || || ||||| |||||| ||| | | | |||| || || |||| | |||||||| Sbjct 2909 GCGCCTCGAACTCGTCACCCCACGTCGTGT-AGAGACCCGGCGCCTCGTTCGGGCAGAAC 2851 Query 119010 AGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 119069 || ||| | || ||||||| |||||||||||||| || || ||||| | ||| Sbjct 2850 AGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCATGAAGAGATCGGGAATCCACATCGCG 2791 Query 119070 GAGAAGAGATCCCGACAGCGA-GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128 |||| ||||| || ||| || || | | || || || | || | || Sbjct 2790 TAGAATAGATCACGCGCGCGGTGCAGCT-CGTTGCCGTGGTTCTTCTTGAGGTCGAGGAA 2732 Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CG 119185 || | ||| || ||||||||||| || || |||| ||||| || ||||| || | Sbjct 2731 CTCGAAGATGTCGGCGTGCCACGGCTCGAGATACATCGCGAACGAGCCCTTGCGCTTGCC 2672 Query 119186 ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACC 119245 ||| |||| | ||||| | ||| ||| |||| || || || ||||| || | || || Sbjct 2671 GCCACCCTGATCCACATAACGCGCCGTGTCGTTGAACACGCGCAGCATGGGCACGAGGCC 2612 Query 119246 ATCGGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCGTGGATG 119303 | || ||| ||||| || || || ||||| || | || | || | ||| | | Sbjct 2611 GTTCGACGAGCCGTTTGTGCCACGGATGTACGAG--TTGGTCGCGCGGATGTTGTGCACG 2554 Query 119304 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 119363 | ||| || || || |||||||| ||||| ||||||| | |||| || | ||| Sbjct 2553 CTGACACCGATGCCGCCGGCCCACTTGGAGATGCAGGCGCACTGCTTGAGCGTGTCATAG 2494 Query 119364 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG 119423 || || ||||||||||| |||| | |||| |||||||| ||||| || || | Sbjct 2493 ATGCCTTCGATCGAGTCGTCCTTCATGGCGAGCAGGAAGCACGACGACAGCTGCGGGCGA 2434 Query 119424 GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTG 119483 || || || |||||||| || || || |||||||| |||| | | ||| ||||| | Sbjct 2433 GGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGTGAAGAAGCTTTGCGACATGTAC 2374 Query 119484 TCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATA 119543 ||||| ||||| | ||||| ||||| | | ||| || |||| | ||| |||| | Sbjct 2373 TCGTACGTCTCGAGCGCGGCGTCGATGTCATGCTTGTGGATGCCGACAGCGACGCGCAGA 2314 Query 119544 AACATGTATTG-GGGTGTTTCCATC-AGGATACCATCGAGCCTCTGGAGGTAACTCTTCT 119601 | ||| | || ||| | | || | | | ||| ||| | | ||||||| ||||| Sbjct 2313 ATCATCTGCTGCGGGCGCT--CAGCGACCTTGCCACCGACGCGCAGGAGGTACGACTTCT 2256 Query 119602 CCAAGGTCTTGAGACCAAAATAG 119624 | | ||||||| ||||| ||| Sbjct 2255 CGAGCGTCTTGAAGCCAAAGTAG 2233 >seq957 Length=6759 Score = 181 bits (200), Expect = 1e-40 Identities = 301/427 (70%), Gaps = 22/427 (5%) Strand=Plus/Minus Query 129884 GAGTTCATACCGATGAGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCC 129943 ||||||||||||||||| | ||||||| |||| || |||| ||||||| || | Sbjct 6153 GAGTTCATACCGATGAGCTCCACCGGGAGCGAGTCCTGGACGAACTCCTTCTCGATCGCG 6094 Query 129944 ACAGCTTCCCGCACGATGGCGTGAATG---GTCTCCGTGCCAGGTCTATTGCGCAAAGTC 130000 ||||| || || | ||| |||| ||| | ||| | | || | | ||| || | Sbjct 6093 ACAGCATCGCGAATGATCTCGTGGATGCGAGACTCGGGG--AGCTTGTTGGCG---AG-C 6040 Query 130001 TTGAAGAGTTCCAC-GGCA----AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTT 130055 ||| |||| | | |||| || || |||||||||||||||||| |||||||| | Sbjct 6039 TTG--GAGTACAGCAGGCACGCGAAGTCGCAGTGGAGACCCTCGTCACGCGAGATGAGCT 5982 Query 130056 CATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAA 130115 | |||||||||| || || ||||| || || |||||||| | |||||| || | || | Sbjct 5981 CGTTCGAGAAGCTGAGGCCAGGCATAAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGA 5922 Query 130116 ATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA-- 130173 | ||||| ||||||||||| ||||| ||| |||||||| | || |||||| || || Sbjct 5921 ACGAGCCCGAGAAGAAGATGCCCTCGACAGCAGCGAACGCGACGATACGCTCGGCGAACG 5862 Query 130174 -GGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACG 130232 || |||| | | || ||||||| | |||||| |||||||| |||| | ||| | Sbjct 5861 CGGCGCGGCGC---GAGTCGCACCACTTGAGCGCCCAGTGCGCCTTCTTCTGCACACAAG 5805 Query 130233 GGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTAT 130292 ||| |||| ||| || | || | ||||| || | | || ||||||||| | | Sbjct 5804 GGATCGTCTCGATGGCGCGGAGAAGGTGGTTCTTCTCGGTCTGGTCCTTGATGTACGTGT 5745 Query 130293 CTATGAG 130299 | ||||| Sbjct 5744 CGATGAG 5738 Score = 120 bits (132), Expect = 4e-22 Identities = 266/390 (68%), Gaps = 18/390 (5%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | | ||| | ||||| Sbjct 6549 TACTCGCCCACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGCGAGATCATGTCCATC 6490 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCA-CTCCAATCTGTTTGAGGAGACG 129846 | || || |||||| || | || ||||| | |||| | | |||||| || Sbjct 6489 CAGTCGAACGGGTTCGACACCTTGTAGATCT-TGGCAACACCAAGCGCGTGGAGGAGGCG 6431 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||| | | | |||||||||||| |||| ||||||||||||||||| | Sbjct 6430 ATCGGCGCAGAACTCAATGTACTGGCACATGAGAGACGAGTTCATACCGATGAGCTCCAC 6371 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||| | |||| || |||| ||||||| || | || || || || | ||| |||| Sbjct 6370 CGGGAGGGAGTCCTGGACGAACTCCTTCTCGATCGCGACGGCATCGCGAATGATCTCGTG 6311 Query 129967 AATG---GTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-GGCA---- 130018 ||| | ||| | | || | | ||| || |||| |||| | | |||| Sbjct 6310 GATGCGAGACTCAGGG--AGCTTGTTGGCG---AG-CTTG--GAGTACAGCAGGCACGCG 6259 Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || || |||||||||||||||||| || ||||| || |||||||||| || || ||| Sbjct 6258 AAATCGCAGTGGAGACCCTCGTCACGCGAAATGAGCTCGTTCGAGAAGCTGAGGCCAGGC 6199 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATC 130108 ||||| || |||||||| | |||||| ||| Sbjct 6198 ATGAGGCCGCGCTTCTTGAGCCAGAAGATC 6169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618260801273600