Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1862 210 3e-49 seq957 154 2e-32 seq836 87.8 2e-12 >seq1862 Length=4717 Score = 210 bits (232), Expect = 3e-49 Identities = 500/745 (67%), Gaps = 13/745 (2%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| | ||| | ||||||| || |||| || || | | ||||| || | | Sbjct 2299 CCCGCAGCAGATGATTCTGCGCGTCGCTGTCGGCATCCACAAGCATGACATCGACGCCGC 2358 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||||| | ||||| ||| | | |||| ||||| || || || || || Sbjct 2359 GCTCGAGACGTACGAGTACATGTCGCAAAGCTTCTTCACGCACGCGACGCCGACGCTGTT 2418 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || || || | || || |||| |||||||| |||||| ||||| || Sbjct 2419 CAACGCCGGCACGCCTCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCGCCATGAAGGACGA 2478 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| | || ||||||| || || | | |||| || ||||| |||||||| || Sbjct 2479 CTCGATCGAAGGCATCTATGACACGCTCAAGCAGTGCGCCTGCATCTCCAAGTGGGCCGG 2538 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTA--TTCGGGGGACA 104518 || || || | | | || | | | || | || |||||| | || || ||| Sbjct 2539 CGGCATCGGTGTCAGCGTGCACAACATCCGCGCGACCAA--CTCGTACATCCGTGGCACA 2596 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || || || | || | | || ||||| ||||| || |||| ||| ||||| ||| Sbjct 2597 AACGGCTCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTTCAACGACACGGCGCGTTAT 2656 Query 104579 GTAAATCAAGCTGGGCGT---CGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 || |||| | ||| | || ||||| || |||| | ||||| ||||| |||||| Sbjct 2657 GTGGATCAGGGTGGCGGCAAGCGCAAGGGCTCGTTCGCGATGTATCTCGAGCCGTGGCAC 2716 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTGC 104695 || || ||| | |||||||| || | ||||| || ||||| | | | | || Sbjct 2717 GCCGACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGCAACGAGCTG-CACCGCGC 2775 Query 104696 -CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 || ||||| |||| ||| | |||||||| ||||||||||||||| | ||||||| | Sbjct 2776 GCGTGATCTATTCTACGCGATGTGGATTCCCGATCTCTTCATGAAGCGCGTTGAGGCCAA 2835 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT-GGGTG 104813 ||| | ||| || || || || || |||| || ||||||| | | | ||| ||||| Sbjct 2836 CGGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCGCCGGGTCTCTAC-ACGACGTGGGGTG 2894 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGC 104873 | ||||| || || || ||| |||||||| || || || ||| |||| | | Sbjct 2895 ACGAGTTCGAGGCGCTGTACCACCAGTACGAGCGCGAGGGCCGCGCGCGCAAGACGATCC 2954 Query 104874 CAGCTGCCG-ATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATAC 104932 || || | | | ||| || || ||| |||| || | |||||| || || || ||| Sbjct 2955 GCGC-GCAGCAGCTCTGGTTCGCGATCCTCGAGTCGCAGATCGAGACGGGCACGCCGTAC 3013 Query 104933 ATGCTTTACAAAGACGCCTGTAACC 104957 ||||| ||||| ||| | || |||| Sbjct 3014 ATGCTGTACAAGGACTCGTGCAACC 3038 >seq957 Length=6759 Score = 154 bits (170), Expect = 2e-32 Identities = 200/274 (73%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 94672 CTCATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAA 94731 ||||| |||| ||| || ||||| | |||||||| || || | |||||| | Sbjct 5738 CTCATCGACACGTACATCAAGGACCAGACCGAGAAGAACCACCTTCTCCGCGCCATCGAG 5797 Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCG 94791 || | || ||| | || ||||| ||| | ||||| | ||||||| || | | || Sbjct 5798 ACGATCCCTTGTGTGCAGAAGAAGGCGCACTGGGCGCTCAAGTGGTGCGACTCGC-GCCG 5856 Query 94792 CGTTCCTTT-GCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 || | || || ||||| || |||| || || ||| ||||| ||||||||||| || Sbjct 5857 CGCCGCGTTCGCCGAGCGTATCGTCGCGTTCGCTGCTGTCGAGGGCATCTTCTTCTCGGG 5916 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 || |||||| |||| | |||||||||||||| || || ||||| || ||| ||||||| Sbjct 5917 CTCGTTCTGCTCTATCTTCTGGCTCAAGAAGCGCGGCCTTATGCCTGGCCTCAGCTTCTC 5976 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||||| ||||| ||||||||||| |||||| Sbjct 5977 GAACGAGCTCATCTCGCGTGACGAGGGTCTCCAC 6010 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 94870 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 94929 |||||||||||||| || |||||||| || ||| ||||||| |||||||| || || ||| Sbjct 6176 TGGCTCAAGAAGCGCGGCCTCATGCCTGGCCTCAGCTTCTCGAACGAGCTCATTTCGCGT 6235 Query 94930 GACGAGGGACTCCAC 94944 |||||||| |||||| Sbjct 6236 GACGAGGGTCTCCAC 6250 >seq836 Length=7233 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 169348 CTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAGAGACCCGCGAC 169407 ||| ||||| || |||||||| ||||| | || || || ||||| | ||| |||||||| Sbjct 2557 CTTGCCACGCAGCGGGAAGACGCCGTACTTGTCGCGTCCGACGACCGCGAGTCCCGCGAC 2616 Query 169408 TGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCG 169448 |||||| | ||| |||||||| || || |||| ||| |||| Sbjct 2617 TGCGAGCGCCTTGGCCGAGTCTCCTTCCGTGAGGATCAGCG 2657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583096320454400