Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1862 349 4e-91 seq957 167 3e-36 seq836 136 4e-27 seq29 123 3e-23 seq6758 93.3 5e-14 >seq1862 Length=4717 Score = 349 bits (386), Expect = 4e-91 Identities = 523/729 (72%), Gaps = 18/729 (2%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||||| | ||| |||| | ||| |||||||| ||||| || ||||||||| Sbjct 2363 GAGACGTACGAGTACATGTCGCAAAGCTTCTTCACGCACGCGACGCCGACGCTGTTCAAC 2422 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || || ||| || ||| ||| ||||| ||||||||| | || |||||||| |||||| Sbjct 2423 GCCGGCACGCCTCGCCCGCAGCTGTCGTCGTGCTTCCTGCTCGCCATGAAGGACGACTCG 2482 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 ||||| |||||||| || ||||||||| |||| ||| ||||||||||||| | || || Sbjct 2483 ATCGAAGGCATCTATGACACGCTCAAGCAGTGCGCCTGCATCTCCAAGTGGGCCGGCGGC 2542 Query 53423 ATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGG 53481 |||||| || | ||| | ||| |||| |||| | | | ||| || || ||||| Sbjct 2543 ATCGGTGTCAGCGTGCAC-AACATCCGCGCGACCAACTCGTACATCCGTGGCACAAACGG 2601 Query 53482 CGTCGCCGAT-GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | ||| ||| || ||||||| ||||| ||||| |||||| ||||||| || || || Sbjct 2602 C-TCGTCGAACGGCCTCGTGCCCATGCTGCGCGTGTTCAACGACACGGCGCGTTATGTGG 2660 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 | |||||||| || ||||||||||| |||||||| || || ||||||||||||||||||| Sbjct 2661 ATCAGGGTGGCGGCAAGCGCAAGGGCTCGTTCGCGATGTATCTCGAGCCGTGGCACGCCG 2720 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC---C 53657 |||| | ||||| ||||| || ||| || || |||| | ||| | || | Sbjct 2721 ACATCTTCGAGTTCCTCGACCTCAAGAAGAACCACGGCAACGA---GCTGCACCGCGCGC 2777 Query 53658 GTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGAC 53716 |||| || || ||| || |||||||||| || ||||||||| | || ||| || Sbjct 2778 GTGATCTATTCTAC-GCGATGTGGATTCCCGATCTCTTCATGAAGCGCGTTGAGGCCAAC 2836 Query 53717 GAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTC--CAGGGTGTCTACGGTG 53774 | |||||| |||| | |||||||||||| || || ||| || | || |||| Sbjct 2837 GGCGAGTGGAGCCTGTTCTGCCCGAACGAGGCGCCGGGTCTCTACACGACGTGG--GGTG 2894 Query 53775 AGGAGTTTAACGAGATGTATCGGACGTACGCAGTTC-AGGGCCGCTACAAGAAGAAGGTC 53833 | ||||| | | | |||| | ||||| || | |||||||| |||| | || Sbjct 2895 ACGAGTTCGAGGCGCTGTACCACCAGTACG-AGCGCGAGGGCCGCGCGCGCAAGACGATC 2953 Query 53834 AAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTAC 53893 |||| || | ||| || |||||| || ||| | |||||||| ||||||||| Sbjct 2954 CGCGCGCAGCAGCTCTGGTTCGCGATCCTCGAGTCGCAGATCGAGACGGGCACGCCGTAC 3013 Query 53894 ATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAA 53953 ||| |||||||| ||| |||| ||| |||||| ||||| ||||| || Sbjct 3014 ATGCTGTACAAGGACTCGTGCAACCGCAAGTCGAACCAGCAGAACCTCGGCACGATTCGC 3073 Query 53954 TCGAGCAAC 53962 ||||||||| Sbjct 3074 TCGAGCAAC 3082 Score = 190 bits (210), Expect = 2e-43 Identities = 328/472 (69%), Gaps = 11/472 (2%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| ||||| | ||||| ||||| || ||||| || || |||||| | Sbjct 3578 GGCGTGCGCAACTCGCTGCTGCTCGCGCCGATGCCGACGGCGTCTACCGCGCAGATCCTC 3637 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 |||||||||||| || ||||||||| |||||||||||| ||| ||||| || ||| Sbjct 3638 GGCAACAACGAGTCGATCGAGCCGTTCACGACCAACATGTACAACCGCCGCGTGCTTGCA 3697 Query 55598 GGTGAGTTTGTCATGATC---AACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAG 55654 || ||||| || |||| |||||| |||| | ||||| || || || || Sbjct 3698 GGCGAGTT---CACGATCGTGAACAAGTACCTGATGAAGGAGCTCATCGAGCTCGGCATC 3754 Query 55655 TGGAACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTG--- 55711 |||| || || | | | || ||| || || || || ||||| || Sbjct 3755 TGGACGCCCGAGGTGCGTAACCAGATCCTGCACGACCACGGCTCAGTGCAGAACGTGCGC 3814 Query 55712 GAGATTCCTC-TGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAG 55770 | ||| || ||| | ||||||| ||| ||||||||||||||| |||||| Sbjct 3815 GTGATCCCGGATGCCG-TGAAGGAGAAGTACAAGACGGTGTGGGAGATCAAGCAGAAGGC 3873 Query 55771 TCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACAT 55830 | || | || ||| || || || || || |||||| |||| |||||| || ||| | Sbjct 3874 TGTGCTCGATATGGCCGCCGACCGCGGCGCCTACATCTGCCAGAGCCAGTCGCTCAACGT 3933 Query 55831 CTTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAA 55890 ||| | | | || | | |||| ||| || ||||||||||||| ||||||||| Sbjct 3934 GCACATCGCGGAGCCGACGATCAGCAAGCTGACGTCCATGCACTTTTACGCGTGGAAGAA 3993 Query 55891 GGGACTCAAGACGGGTATGTACTATCTGCGGACCCGCGCCAAGGCCAAGGCG 55942 ||| |||||||||||||||||||| ||||| | ||| | |||||| | ||| Sbjct 3994 GGGTCTCAAGACGGGTATGTACTACCTGCGCAGCCGACCGAAGGCCGATGCG 4045 >seq957 Length=6759 Score = 167 bits (184), Expect = 3e-36 Identities = 335/489 (69%), Gaps = 7/489 (1%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 |||||||||||||| || |||||||| | ||| ||||| | ||||| || || |||| Sbjct 5967 AGGCCAGGCATAAGGCCGCGCTTCTTGAGCCAGAAGATAGAGCAGAACGAGCCCGAGAAG 5908 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA--CGGTGCATCGGAAG 74922 |||||||| |||||| || || ||||| | || | ||||| ||| || || || Sbjct 5907 AAGATGCCCTCGACAGCAGCGAACGCGACGATACGCTCGGCGAACGCGGCGCGGCGCGAG 5848 Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTG-ACCGCAGGGACAGTATCGATCGC 74980 || ||| | | ||||| | || ||| | || || ||||| || ||||| || Sbjct 5847 TCGCACCACTTGAGCGCCCAGTGCGC-CTTCTTCTGCACACAAGGGATCGTCTCGATGGC 5789 Query 74981 TTGGAAGAGGCTTGCCTTCTC-TTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGT 75039 ||| ||| |||||| || || ||||||| | | |||| || | || |||| Sbjct 5788 GCGGAGAAGGTGGTTCTTCTCGGTCTGG-TCCTTGATGTACGTGTCGATGAGCAGCGAGT 5730 Query 75040 ACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTG 75099 || |||||| || || ||| | |||| | ||||||| | |||||||| | Sbjct 5729 ACACCTCCGAGTGGATGTTCTCAATCGCAATCTGGAAGCCGTAGAAGCAACGCGCCTCAG 5670 Query 75100 CAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGG 75159 || ||| || || | || ||||| ||| ||||| |||||||||| || || Sbjct 5669 GAACCTGCACCTCGCTGCTGAAGTTCATCGCGAGGTTCTCGTTGACGATGCCATCACTGG 5610 Query 75160 CGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCC 75219 | ||||| || || || || |||||||||| |||||||| ||| ||||| |||| || Sbjct 5609 CCGCGAAGAACGCGAGCACGTGCTTGATAAAGTAGCGCTCATTGTCCGTGAGGTTGTTCC 5550 Query 75220 AATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCT 75279 | ||||| ||||| | | | || ||||| || |||||||||| ||| | |||| Sbjct 5549 AGTCCTTGAGGTCGTGCACGAGGTCGATCTCTTCCGCCGTCCAGAAGCTCGCCTCAGCCT 5490 Query 75280 TTTTGTACA 75288 | ||||||| Sbjct 5489 TCTTGTACA 5481 >seq836 Length=7233 Score = 136 bits (150), Expect = 4e-27 Identities = 308/457 (67%), Gaps = 16/457 (4%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || || ||||| ||||| ||||||| ||| | |||||||| || || ||||| | Sbjct 1460 CCTGTGCCAATGCCTTCTGCGCCGTTGATCAGCAGCATCGGCAGGATCGGCACGTAATAG 1519 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCC--- 151992 | |||||||| | | || || || |||||| ||| | | | ||| || Sbjct 1520 TGGGGCTCCACTGGGTACCCATCGTCGTCCACGTAGCTCAGCAGCGCGTCGTCGTCCTCT 1579 Query 151993 GGATCGAATATCCGTCGAGTCATAGGACT----CAAACGCGTGAAGATGTATCGGGAGCT 152048 ||| || | | | || || || || |||| |||||||| || || | || Sbjct 1580 GGA---AACAGCAGGCGCGTG-TATTTCTGCAGCAAA---GTGAAGATATAGCGCGGACT 1632 Query 152049 GGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTT 152108 || || |||||||| || ||| ||||| ||||||||||| || || | || | Sbjct 1633 CGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGTCCCGACGGATACAGCAATGG 1692 Query 152109 GAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGC 152168 |||||||| || || || | | ||| |||| || |||||||| ||||| ||| Sbjct 1693 CAGGTTGTTAGCACCGACATAGTCCTGCGCCATGTTGACAATCGTCGAGTGCAGCGACGC 1752 Query 152169 TTCACCGTGGTGATACGCCGTCTGCTCCGCGA-TGTATCCCGCCAACTGCGCCACCTTCA 152227 || |||||||| ||||| || |||| ||| | ||| || || | |||||| ||||| | Sbjct 1753 CTCGCCGTGGTGGTACGCAGTGTGCT-CGCTACAGTAACCAGCGAGCTGCGCGACCTTGA 1811 Query 152228 TGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCA 152287 ||| ||||||| || ||| ||||| ||| | | |||||||||||| || || | Sbjct 1812 CCTCCTTCGTCAGCTTACGCTTCAGACACGCGAACAGCACCTTGCGCTGCGAGACCTTGA 1871 Query 152288 AACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||||| |||||| || | ||| ||| | |||| Sbjct 1872 GCCCGTCGACCACGGACGGTAGCGACCGCGCGTTGTC 1908 Score = 105 bits (116), Expect = 7e-18 Identities = 175/250 (70%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 |||||| || || || | || || || |||||||| || || ||||| || || || Sbjct 1612 AGTGAAGATATAGCGCGGACTCGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTG 1671 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| ||| | || | ||||||||| || || ||| ||| || |||| |||||| Sbjct 1672 TCCCGACGGATACAGCAATGGCAGGTTGTTAGCACCGACATAGTCCTGCGCCATGTTGAC 1731 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCAC-GTAGC 117482 |||||| || || |||||| || ||||| ||||| || |||| ||| || ||| | Sbjct 1732 AATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGGTACGCAGTGTGCT-CGCTACAGTAAC 1790 Query 117483 CCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCA 117542 | || ||||| || ||||| | || |||||| || ||| || || || | | || Sbjct 1791 CAGCGAGCTGCGCGACCTTGACCTCCTTCGTCAGCTTACGCTTCAGACACGCGAACAGCA 1850 Query 117543 CCTTGCGCTG 117552 |||||||||| Sbjct 1851 CCTTGCGCTG 1860 >seq29 Length=20499 Score = 123 bits (136), Expect = 3e-23 Identities = 247/359 (69%), Gaps = 13/359 (4%) Strand=Plus/Plus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 ||| | ||||| ||||||||| | ||||| ||| ||||| | | || || || || Sbjct 4629 CGCGAGCTCGACAAACTCACGCACACTGTGGCACTCGCCCGTCGCGACGACAAAGTCCTC 4688 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 ||| || ||||||||||| ||||||| | ||||||||| || || ||||| Sbjct 4689 GGGGGTCTCGTGCTGCAACATCTTCCACATGCACTCGACGTAGTCGCGCGCATGGCCCCA 4748 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAGCTC--GATTGGCTTGG----CCGTCTTGTTCCA 124654 ||||||||| || ||||| || |||| | || | | | | | | ||| | | Sbjct 4749 GTCGCGCTTCGCCTCCAGATTACCGATGTACAGACAGTCCTCGATACCAGCGTTGATGCG 4808 Query 124655 CTCCGCCAAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTC 124714 | | | | | | || |||||||| ||||||||| | ||||||||| ||| Sbjct 4809 CACAAC---AGCGCGCGTGATCTTGCGGGTCACAAACGTTGGTCCGCGTCGCGGGCTCTC 4865 Query 124715 GTGGTTGAACAGAATGCCAGTACAC-GCAAACATCCCGTACGACTCGCGGTAGTTTTTCG 124773 ||||||||| || ||||| || || |||||||| ||||||| |||||||||| ||| || Sbjct 4866 GTGGTTGAAGAGGATGCC-GTTTACGGCAAACATGCCGTACGCCTCGCGGTAG-TTTACG 4923 Query 124774 TC-ATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGT 124831 | |||| || |||| |||||| || || || || || ||||| ||||| || Sbjct 4924 ACGCTCCAGTAAGCAAACTGCTTGGCAACACCGTACGGCGAGCGCGGGTAAAATGGTGT 4982 >seq6758 Length=1450 Score = 93.3 bits (102), Expect = 5e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATCG-GGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT 152086 ||| |||||||| || || | || | ||||| || ||||| || || || || ||||||| Sbjct 1209 CGTAAAGATGTAACGAGGCGATG-CTGCATCTTTACCACCCGCTAGTCGAGTACCAAACT 1267 Query 152087 GTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCA 152146 | || || | || | || ||||||| ||||| |||| || |||| || | Sbjct 1268 GACCGTTTGGAGACAACAGATGGATGTTGTTGCTTCCCACAAAATCTTGGGCCATGTTGA 1327 Query 152147 CAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATC 152206 ||||||||| | |||||| |||||||||||| ||||| | ||||| | | ||||| Sbjct 1328 TAATCGTGCCGTTGAGACTCTGTTCACCGTGGTGGTACGCAGAATGCTCGGACACGTATC 1387 Query 152207 CCGCCAACTGCGCCACCTTCATGTC 152231 | | | ||| || ||||| || || Sbjct 1388 CACCAAGCTGAGCAACCTTAATTTC 1412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547061685088000