Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq1862 372 3e-98 seq836 163 3e-35 seq1079 149 7e-31 seq5064 129 7e-25 seq957 104 3e-17 >seq1862 Length=4717 Score = 372 bits (412), Expect = 3e-98 Identities = 1105/1683 (66%), Gaps = 47/1683 (3%) Strand=Plus/Minus Query 80005 ACCGTCACCTGAATTGGCTTGGCCTTTGCCCGCGTCCGCAGATAGTACATGCCCGTCTTG 80064 ||||| | ||| || | | |||||| | || | ||||| |||||||| ||||||||| Sbjct 4059 ACCGTGAACTGGATCGCATCGGCCTTCGGTCGGCTGCGCAGGTAGTACATACCCGTCTTG 4000 Query 80065 AGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCC 80124 || ||||||||||| |||| | |||||| || | ||||| | || || | | | Sbjct 3999 AGACCCTTCTTCCACGCGTAAAAGTGCATGGACGTCAGCTTGCTGATCGTCGGCTCCGCG 3940 Query 80125 ATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCA 80184 ||| | ||| || ||||| ||| |||||| | || || || || || ||||| || Sbjct 3939 ATGTGCACGTTGAGCGACTGGCTCTGGCAGATGTAGGCGCCGCGGTCGGCGGCCATATCG 3880 Query 80185 ATAATTGACTTTTGTGGAATTTCCCATAC-----TGTACGATACACCTT-ACGAAGCTCC 80238 | | | ||| || || ||||| || ||||| | | |||| ||| || | Sbjct 3879 AGCACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTAC--TTCTCCTTCACG--GCATC 3824 Query 80239 TCTGGA--ATGTCCAGATTTTGCACACTGCCACCGTCCTTTACAATTTGATTTTTCAATT 80296 | ||| | | || || ||||| ||| ||| | | || || || || | Sbjct 3823 -CGGGATCACGCGCACGTTCTGCACTGAGCCGTGGTCGTGCAGGATCTGGTTACGCACCT 3765 Query 80297 CAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCACAAGGTGCTTGTTAATCATGACAA 80356 | | |||||||| || |||| | || || |||| |||| |||||| | || | Sbjct 3764 CGGGCGTCCAGATGCCGAGCTCGATGAGCTCCTTCATCAGGTACTTGTTCACGATCGTGA 3705 Query 80357 ACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGT 80416 |||| || || || ||| || |||| ||| || ||| | ||||| | | ||||| Sbjct 3704 ACTCGCCTGCAAGCACGCGGCGGTTGTACATGTTGGTCGTGAACGGCTCGATCGACTCGT 3645 Query 80417 TGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTCC 80476 |||| ||||||||||| || || ||||||||||||||| ||| || ||| || || | Sbjct 3644 TGTTGCCGAGGATCTGCGCGGTAGACGCCGTCGGCATCGGCGCGAGCAGCAGCGAGTTGC 3585 Query 80477 GCAGGCCGTGCTTCTTGA---TATCCTCG--CGCAAATCTGACCAAAAATCAACCCCAAC 80531 ||| ||||| || | || | ||| | ||| | | || | | | | Sbjct 3584 GCACGCCGTACTGCGCGACGCTGGCCTTGAGCGCGGCCCAGTCCCAGAGGCCGGACGTCG 3525 Query 80532 GCTGTGAC--CCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAAC 80589 || ||||| |||||||||||| ||| |||||||||| | | || || ||| || | Sbjct 3524 GC-GTGACGCCCCACATGTCGTACTGGAAGATGCCCTTGCTCACAGGTGAGCCCTCGTAG 3466 Query 80590 GTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGA---CTCCATAAGGGCCGCGTGA 80646 | |||||||||| | | ||| || ||||| ||| |||||| | |||| Sbjct 3465 CTGGCGTACGGGCCGTGCTCCTTTGCGAGCTCCATCGAGGCCTCCATC-GCGCCG----- 3412 Query 80647 TAAATGCA----CTCAAAGACGCCCTTGTTCACACCGCGCGCCT-GTGGGTCGTCGAACG 80701 || | || ||| |||| | |||||| | |||| |||| || | || || |||| Sbjct 3411 -AAGTACAGCGTCTCGAAGATGTTCTTGTTGAGCTCGCGGGCCTCGTCGCTC-TCAAACG 3354 Query 80702 ACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGT 80761 ||||||| | |||||| | || || || ||||| ||||||||| |||||||||||| Sbjct 3353 CGTAGCCCATGAGGATGAACGCATCCGCGAGACCCTGCACGCCGATGCCGATCGGGCGGT 3294 Query 80762 GGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGT 80821 ||||| ||| |||||||||||| || || ||||| |||| | |||||||| || Sbjct 3293 GGCGCAGGTTGCTTCGCTCGGCCTCGGGGATCGGGTAGTAGTTGATGTCGATGACCTTGT 3234 Query 80822 TCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA---TTGGT 80878 | |||||||| || || ||| || | || | || |||| |||||||| | || Sbjct 3233 TGAGGTTGCGCGTGACGACCTTGGTGATGTCGTACAGCTTCTTGAAGTCGAAGGTCTTGT 3174 Query 80879 TCCCCTTCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAG 80938 | |||||||| || || | |||||| || |||||||| || ||||| || | Sbjct 3173 CGTCGTTCACAAACTTCGACAGCGCGATGGACGCGAGGTTGCACACCGCGACCTCGTCGG 3114 Query 80939 CATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTT 80998 || |||||| | || ||| | || || ||| || || ||||| | Sbjct 3113 GCGACGTGTACTCGAGCACCTCACAGCAGAGGTTGCTCGAGCGAATCGTGCCGAGGTTCT 3054 Query 80999 TCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGA 81058 |||||| |||||| |||||| | ||||||||| ||||||||| || || ||||||| Sbjct 3053 GCTGGTTCGACTTGCGGTTGCACGAGTCCTTGTACAGCATGTACGGCGTGCCCGTCTCGA 2994 Query 81059 CCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGC 81118 ||| |||| |||||| ||| ||| | || |||| || | |||||| || Sbjct 2993 TCTGCGACTCGAGGATCGCGAACCAGAGCTGCTGCGCGCGGATCGTCTTGCGCGCGCGGC 2934 Query 81119 CTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGT-GAG 81176 | ||| | | |||| | ||| ||| | ||||||| | |||| | || || ||| Sbjct 2933 CCTCGCGCTCGTACTGGTGGTACAGC-GCCTCGAACTCGTCACC-CCACGTCGTGTAGAG 2876 Query 81177 GTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCAT 81236 | || |||||| ||||| | |||| ||| ||| || | ||| || |||||| Sbjct 2875 ACCCGGCGCCTCGTTCGGGCAGAACAGGCTCCACTCGCCGTTGGCCTCAACGCGCTTCAT 2816 Query 81237 GAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACC 81296 ||| || || ||||| | ||| ||| || || || ||| | ||| | || Sbjct 2815 GAAGAGATCGGGAATCCACATCGCGTAGAATAGATCACGCGCGCGGTGCAGCTCGTTGCC 2756 Query 81297 CTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACAC 81356 ||||| | ||||| || || | |||||| || ||||| ||||| ||||||| Sbjct 2755 GTGGTTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGATACAT 2696 Query 81357 GGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAA 81413 |||| ||| |||||||| | ||||||||| | || ||||| || || |||| || Sbjct 2695 CGCGAACGAGCCCTTGCGCTTGCCGCCACCCTGATCCACATAACGCGCCGTGTCGTTGAA 2636 Query 81414 TACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCC 81473 || |||| ||| || | || || | ||| ||||| || || ||| ||| Sbjct 2635 CACGCGCAGCATGGGCACGAGGCCGTTCGACGAGCCGTTTGTGCCACGGATGTACGAGTT 2576 Query 81474 CTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGC 81533 | ||||| | ||| | | ||||||||| || | |||||| || || || Sbjct 2575 GGTCGCGCGGATGTTGTGCACGCTGACACCGATGCCGCCGGCCCACTTGGAGATGCAGGC 2516 Query 81534 ACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAA 81593 ||| | || | || ||||| || || ||||| || | |||||| | |||| ||| Sbjct 2515 GCACTGCTTGAGCGTGTCATAGATGCCTTCGATCGAGTCGTCCTTCATGGCGAGCAGGAA 2456 Query 81594 ACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAAT 81653 || |||| ||| |||| | |||||| |||||||| || || |||||||| | Sbjct 2455 GCACGACGACAGCTGCGGGCGAGGCGTGCCGGCGTTGAACAGCGTCGGCGTCGCGTGCGT 2396 Query 81654 GAA 81656 ||| Sbjct 2395 GAA 2393 >seq836 Length=7233 Score = 163 bits (180), Expect = 3e-35 Identities = 202/274 (74%), Gaps = 2/274 (1%) Strand=Plus/Minus Query 31977 CGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAA 32036 ||||| ||||| |||||| || |||||||||||| | | ||| || || ||| || Sbjct 1885 CGTGGTCGACGGGCTCAAGGTCTCGCAGCGCAAGGTGCTGTTCGCGTGTCTGAAGCGTAA 1826 Query 32037 CCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTAC-GTGGCAGAGCAAACGGCCT 32095 ||| ||| || | ||||| |||||||| | || ||| || || ||||| || || | Sbjct 1825 GCTGACGAAGGAGGTCAAGGTCGCGCAGCTCGCTGGTTACTGTAGC-GAGCACACTGCGT 1767 Query 32096 ATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCG 32155 | |||||||||||||||||||| || || ||||||||| | || ||| ||| ||||| Sbjct 1766 ACCACCACGGCGAGGCGTCGCTGCACTCGACGATTGTCAACATGGCGCAGGACTATGTCG 1707 Query 32156 GTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTG 32215 |||| || |||||| || || | || || ||||||||||| || || || || | Sbjct 1706 GTGCTAACAACCTGCCATTGCTGTATCCGTCGGGACAGTTTGGCACGCGCCTGCAGGGCG 1647 Query 32216 GCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 ||||||| || ||||| | || || |||||||| Sbjct 1646 GCAAGGACGCCGCGAGTCCGCGCTATATCTTCAC 1613 >seq1079 Length=6315 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || ||||||||||| || || || || || ||| | Sbjct 777 ATGCAGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACGTCGAGCCTTCG 836 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || ||||||| ||| | ||| || || ||||||||||||||||| ||||| || ||| Sbjct 837 GACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGATCAG 896 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| |||||||| | || || || | ||||| || Sbjct 897 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCGGACTACAAC 956 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | || ||||| ||||| Sbjct 957 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGCCTTCGTGGTGG 1003 >seq5064 Length=2045 Score = 129 bits (142), Expect = 7e-25 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || || ||||| || || || || || ||| | Sbjct 203 AATGCAGATCTTCGTGAAGACCCTCACGGGGAAGACGATCACCCTGGACGTCGAGCCCTC 144 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||||||||| ||| | ||| || || ||||||||||||||||| ||||| || || Sbjct 143 GGATAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCGGATCA 84 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || || || || ||||| |||||||| | || || || | ||||| || Sbjct 83 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTTTCGGACTACAA 24 Query 27585 TGTCCAAAAGGAATCCACTCT 27605 |||| ||||| || || || Sbjct 23 CATCCAGAAGGAGTCGACGCT 3 >seq957 Length=6759 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 64715 AGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTA 64774 ||||| ||| || || || ||| || || || ||||| || || || ||||| |||| Sbjct 5871 AGCGTATCGTCGCGTTCGCTGCTGTCGAGGGCATCTTCTTCTCGGGCTCGTTCTGCTCTA 5930 Query 64775 TTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCT 64834 | |||||||| || ||||| ||||| ||||| || || || ||||||||||| |||| Sbjct 5931 TCTTCTGGCTCAAGAAGCGCGGCCTTATGCCTGGCCTCAGCTTCTCGAACGAGCTCATCT 5990 Query 64835 CTCGGGACGAGGGGCTCCAC 64854 | || |||||||| |||||| Sbjct 5991 CGCGTGACGAGGGTCTCCAC 6010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570149572467200