Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq217 197 1e-45 seq4313 84.2 2e-11 >seq217 Length=11889 Score = 197 bits (218), Expect = 1e-45 Identities = 404/599 (67%), Gaps = 1/599 (0%) Strand=Plus/Minus Query 29862 CGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGT 29921 ||||||| ||| ||||||||||| | | || ||||| ||| || || || | ||| Sbjct 4705 CGAGCTGCACCTTAAGCGGTTCCACATGGTTCAAGTAGATGTGCGCATCGCCGATCGTGT 4646 Query 29922 GGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGT 29981 ||| || ||||| | ||||| ||||| || || || | || | || | || Sbjct 4645 GGATGAAGTCTCCAGCACGCAGCCCTGTGACCTGCGCGATGAGTCGAGTCAACAGCGCGT 4586 Query 29982 AGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGAC 30041 |||| ||||||||||| || || ||||| |||||||| | || | |||||| | ||||| Sbjct 4585 AGCTCGCGATGTTAAAAGGCACGCCGAGTCCCATGTCAGCTGAGCGCTGGTACATCTGAC 4526 Query 30042 ACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCA 30101 |||| ||||| |||| | ||||| ||||| || | ||| ||||| || || |||| Sbjct 4525 ACGACAGCTCGCCGTTGGCGACGTAGAACTGGCAGAACATGTGACACGGCGGCAGCGCCA 4466 Query 30102 TGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGT 30161 | | ||| |||||||| || ||| ||||||||| | || | |||||| Sbjct 4465 TCTCCTTGAGGTCCGCAGGGTTCCATGCCGACATGATGATGCGACGATCGTTTGGGTTCG 4406 Query 30162 TCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCC 30221 || ||| || | | | | |||||| || || ||| || ||||| || || Sbjct 4405 TCTTGAGCTTGTGAATGACCTCCGCCAGCTGGTCGACTCCCTGGCCAGAGTAATCGGCGT 4346 Query 30222 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281 |||| |||||||| || || || || | ||| ||||| || ||||| ||||| || | Sbjct 4345 GCATGGTCGTGTACTTGGCACCAAAGTGGCGCCATTGGAAGCCATACACTGGTCCGAGAT 4286 Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 | || |||| | || ||| || | | |||| | || |||| || || | | Sbjct 4285 CGCCAGCTTCACGATGTCCGAGACCGATGCTCTCCAGGTATTCCTTGGATCCATTACCAT 4226 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30401 |||| || | | ||||| || | | |||| ||||||| || |||| ||||| Sbjct 4225 CCCAAATGTGGATGCCCTTGTCCTGCAACGTCTTGGCGTTTGTGTCGCCACTGATGAACC 4166 Query 30402 ACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAAA 30459 |||||||||| ||| ||||| | ||| || || | |||||||| || || |||||| Sbjct 4165 ACAGCAGCTCTTCCGCGACGCCGCGCCAGAATACGCGTTTGGTCGTCAGCAGCGGGAAA 4107 >seq4313 Length=2415 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/138 (78%), Gaps = 7/138 (5%) Strand=Plus/Plus Query 52761 CCAGAGATGGGCGACAAGTTT-GC-GTCGTTCACGGCGCAAAAGGGGACGTGCGGAGCCG 52818 || ||||| ||||||||||| || |||| |||||| || ||||| |||||| | Sbjct 1585 CCCGAGATCGGCGACAAGTTCAGCAGTCGC-CACGGC-CAGAAGGGCGTGTGCGGCACGA 1642 Query 52819 TCCTGACCCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCC-GACCTCATCATC 52877 ||| | ||||||||||||||| ||| || | ||||| || |||||| ||||| ||||| Sbjct 1643 TCCGCAACCAGGAGGACATGCCGTTCAACGACGACGGCGT-GTGCCCGGACCTGATCATG 1701 Query 52878 AACCCCCACGCCTTTCCC 52895 ||||| |||| |||||| Sbjct 1702 AACCCGCACG-GTTTCCC 1718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406198684955520