Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq8564 185 2e-41 seq1079 136 9e-27 seq9512 132 1e-25 seq5064 111 4e-19 seq22467 95.1 3e-14 seq19900 93.3 1e-13 >seq8564 Length=1050 Score = 185 bits (204), Expect = 2e-41 Identities = 212/284 (75%), Gaps = 1/284 (0%) Strand=Plus/Minus Query 7445 TATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAA 7504 ||||||| || ||||||| ||||||||| | | ||||| | ||| ||| | | |||| Sbjct 825 TATATTTGATTTTTGGTGCTTTTTCTGGTGTAGTTGGTACAACATTATCTCTTTTAATAA 766 Query 7505 GGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACG 7564 | | |||||||| || ||| |||||| || | || ||| || | || || | Sbjct 765 GAATGGAATTAGCACAACCTGGTAATCAAATTTTTATGGGAAATCATCATTTATATAATG 706 Query 7565 TTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGA-TA 7623 || || |||| |||||||| || | |||||||||||| | |||||||| || | | | Sbjct 705 TTGTTGTTACTGCGCATGCTTTCTTAATGATTTTCTTTATGGTTATGCCTATTTTAAATT 646 Query 7624 GGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCA 7683 || || ||||| ||||| ||||| ||||||||||| ||||| || ||||||||||| || Sbjct 645 GGAGGCTTCGGTAATTGGTTCGTACCTTTAATGATCGGTGCACCAGATATGGCTTTCCCT 586 Query 7684 AGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 || | || ||||| |||||||| ||| |||| ||||| ||||| Sbjct 585 AGAATGAATAATATTAGTTTTTGGTTATTACCTCCTTCATTATT 542 Score = 98.7 bits (108), Expect = 2e-15 Identities = 85/104 (82%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || || ||||| || |||||||||||||| | | |||||| ||||| || || Sbjct 143 TTCAGGGTGTCCGAAAAACCAAAATAAATGTTGATATAATACAGGATCACCTCCACCAGA 202 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||| | || |||||| ||||||||||||||||| |||| Sbjct 203 TGGATCATAGAATGAAGTATTTAAATTTCTATCAGTTAATAACA 246 >seq1079 Length=6315 Score = 136 bits (150), Expect = 9e-27 Identities = 165/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || |||||||| || || || || |||| ||||| || | | || Sbjct 998 ACGAAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGCGT 939 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || |||||||| || || || || || || || || || Sbjct 938 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCC 879 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||||| ||| || ||| |||| || | || ||||| | Sbjct 878 CTCCTTGTCCTGGATCTTCTGCTTGACATTGTCAATGCTGTCCGAAGGCTCGACGTCGAG 819 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||||||||| |||| ||| || | ||| | ||||| || Sbjct 818 CGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTT 774 >seq9512 Length=910 Score = 132 bits (146), Expect = 1e-25 Identities = 101/118 (86%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||||||||||||||||||| || || |||||||| |||||||||||||| ||||| Sbjct 518 GAAGATTTGACCATCAGTAATAGAAATTACGTTTGTAGGAATATAAGCAGAAACGTCACC 577 Query 4530 TGCTTGTGTTTCGA-CAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATT 4586 ||||| ||||| | | ||||||| ||||||| ||| |||||||||| |||||||| Sbjct 578 AGCTTGAGTTTCAATTACCAGGTAAAGCTGTTAATGAACCACCACCAATTTTTTTATT 635 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/88 (82%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 5031 GCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAA-CATGCTTT 5089 || || || |||||||||| | |||| |||||||||||||| ||||| ||| |||||| | Sbjct 837 GCTCCGTATACAGGTTGTGCTTTAGGTGAATATTTTAGAGACAATGGAAAACCATGCTGT 778 Query 5090 AATCATCTACGATGATTTAAGTAAACAA 5117 ||| | || ||||||||| ||||||| Sbjct 777 AATTTTTTATGATGATTTATCTAAACAA 750 >seq5064 Length=2045 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225514 AGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTC 225573 || || || || || |||| ||||| || | | || | || || || |||||||| Sbjct 3 AGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGGCCGTCCTCGAGCTGCTTG 62 Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| || || || || || || || || || |||||||| |||||||| ||| Sbjct 63 CCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTCTGC 122 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| || ||| | || |||| || ||||| | ||||||||||| ||||| | Sbjct 123 TTGACATTGTCAATGCTATCCGAGGGCTCGACGTCCAGGGTGATCGTCTTCCCCGTGAGG 182 Query 225694 GTTTTTATGAACACTTGCATTTTATG 225719 || || | ||| | |||||||| || Sbjct 183 GTCTTCACGAAGATCTGCATTTTCTG 208 >seq22467 Length=302 Score = 95.1 bits (104), Expect = 3e-14 Identities = 112/148 (76%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 7731 AGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACA 7790 || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| | | Sbjct 280 AGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTTGTGTA 221 Query 7791 ATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTG-CGGTCGTAGTACTCAGGTGGAAT-AT 7848 || |||||| || |||||| ||| | |||| || | || | ||||| ||| | | Sbjct 220 GGCTCCCGTCAATTCCTTTGAATTTCGATCTTGCCGATTATACTTTTCAGGCGGAGTGCT 161 Query 7849 TTACGCGTTAGCTTAATTAATATAAAAA 7876 | |||||||||||| || || |||||| Sbjct 160 TAACGCGTTAGCTTGAT--ATCTAAAAA 135 >seq19900 Length=356 Score = 93.3 bits (102), Expect = 1e-13 Identities = 73/86 (85%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 372623 AGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGC-TAAGTT 372681 ||||| ||||||||| |||| ||||||||||| ||||||| ||||||| || ||| | Sbjct 138 AGGTGGCACAGAATAGGGGGTTGCGACTGTTTAATAAAAACTTAGGACTCTGCTTAATTG 197 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 198 GTAACATGATGTATAGGGTCTGACAC 223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192186498856640