Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1079 176 9e-39 seq5064 149 1e-30 seq17 120 6e-22 seq836 113 9e-20 seq4761 93.3 9e-14 >seq1079 Length=6315 Score = 176 bits (194), Expect = 9e-39 Identities = 185/241 (77%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| ||||| || || || || | ||| || || |||||||||||||| | Sbjct 1004 ACCACCACGAAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 945 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||| ||||| || || || ||||| ||||||| || || || || || Sbjct 944 GAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGG 885 Query 282992 AATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || ||||||||||| |||||||| ||||| || | || || ||||||||| |||| Sbjct 884 GATTCCCTCCTTGTCCTGGATCTTCTGCTTG-ACATTGTCAATGCTGTCCGAAGGCTCGA 826 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATACA 283110 | ||||| ||||||||||| || |||| |||||| ||||| |||||||| || | |||| Sbjct 825 CGTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTTTACCTACA 766 Query 283111 A 283111 | Sbjct 765 A 765 >seq5064 Length=2045 Score = 149 bits (164), Expect = 1e-30 Identities = 152/196 (78%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | |||||||||||| ||||| || || || ||||| ||| Sbjct 12 TCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 71 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGT 283027 |||| || || || || || || ||||||||||| |||||||| ||| || || | Sbjct 72 ATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTCTGC-TTGACATT 130 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || | ||||| | ||||| || || ||||||||||| ||||| | ||||| || Sbjct 131 GTCAATGCTATCCGAGGGCTCGACGTCCAGGGTGATCGTCTTCCCCGTGAGGGTCTTCAC 190 Query 283088 GAATATCTGCATTTTC 283103 ||| |||||||||||| Sbjct 191 GAAGATCTGCATTTTC 206 >seq17 Length=23322 Score = 120 bits (132), Expect = 6e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 316162 TCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGA 316221 || ||||| ||||| || ||||||| ||||||||||| |||| ||| ||||| || Sbjct 14201 TCCTTGTCCTCACCCGACTGGAAACGCCACTGGATGTACTGGTTGGCCGTAATGTCGAGG 14142 Query 316222 TGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGC 316281 || ||||| |||||||||||||||||||| || ||||| || | |||||| || ||| Sbjct 14141 TGCTCCTCAATGTGGTGGAAAGCGTGCTGGGCAACGTAGGCGAAACGCATGGCCGGGTGC 14082 Query 316282 TTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGAGAGTACTT 316341 ||||| || ||||| |||| || | || || || |||| || ||||| || Sbjct 14081 TTCCACACCGTACCGACCGTAGGCTCGACCTCACCCGTCAGCATCTTGATGAGCGTCGAC 14022 Query 316342 TTTCCCGCGCCGTT 316355 || || || ||||| Sbjct 14021 TTACCGGCACCGTT 14008 >seq836 Length=7233 Score = 113 bits (124), Expect = 9e-20 Identities = 196/280 (70%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 273780 GTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGA 273839 ||||| || || | | |||||| ||||||||| || ||||| | || |||||||| Sbjct 1613 GTGAAGATATAGCGCGGACTCGCGGCGTCCTTGCCGCCCTGCAGGCGCGTGCCAAACTGT 1672 Query 273840 CCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACG 273899 ||| || ||| | | |||||| |||||| || ||||| ||||| || || Sbjct 1673 CCCGACGGATACAGCAATGGCAGGTTGTTAGCACCGACATAGTCCTGCGCCATGTTGACA 1732 Query 273900 ATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATA-TAACC 273958 || ||| || || || ||||||||||||| || || |||| || || | | ||||| Sbjct 1733 ATCGTCGAGTGCAGCGACGCCTCGCCGTGGTGGTACGCAGTGTGCTC-GCTACAGTAACC 1791 Query 273959 ACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGA-ATGCGGAATACAACA 274017 | || ||| || ||||| || || |||||| || ||||| | | || | ||| || Sbjct 1792 AGCGAGCTGCGCGACCTTGACCTCCTTCGTCAGCTTACGCTTCAGACACGCGA-ACAGCA 1850 Query 274018 CCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGG 274057 |||| ||||||||| ||||| ||| || || || || || Sbjct 1851 CCTTGCGCTGCGAGACCTTGAGCCCGTCGACCACGGACGG 1890 >seq4761 Length=2180 Score = 93.3 bits (102), Expect = 9e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || || || || | ||| || || |||||||||||||| | Sbjct 1530 ACCACCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGA 1589 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 |||||||||||| ||||| || || || ||||| ||||||| || || || || Sbjct 1590 AAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATC 1643 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/111 (79%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 282994 TACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||||||||||| |||||||| ||| || || | || || | ||||| | ||||| Sbjct 1730 TACCCTCCTTGTCCTGGATCTTCTGC-TTGACATTGTCAATGCTATCCGAGGGCTCGACG 1788 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 || || ||||||||||| ||||| | ||||| ||||| |||||||||||| Sbjct 1789 TCCAGGGTGATCGTCTTCCCCGTGAGGGTCTTCACGAAGATCTGCATTTTC 1839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046436640034240