Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq5064 152 1e-31 seq1079 143 6e-29 seq4761 87.8 4e-12 >seq5064 Length=2045 Score = 152 bits (168), Expect = 1e-31 Identities = 159/208 (76%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || |||||||| || ||||| || || ||||||||||| || || || Sbjct 205 AAAATGC---AGATCTTCGTGAAGACCCTCACGGGGAAGACGATCACCCTGGACGTCGAG 149 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| || | ||| || || ||||| || ||||| |||||||| || |||||||||||| Sbjct 148 CCCTCGGATAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCCCTCCG 89 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || || ||||||||||| || |||||||| || || | || ||| | || Sbjct 88 GATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTTTCGGAC 29 Query 178095 TATAACGTCCAAAAAGAATCAACACTGC 178122 || ||| |||| || || || || |||| Sbjct 28 TACAACATCCAGAAGGAGTCGACGCTGC 1 >seq1079 Length=6315 Score = 143 bits (158), Expect = 6e-29 Identities = 164/220 (75%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | || ||||| || ||||| || || || |||||||| ||||| | Sbjct 769 AGGTAAAGATGC---AGATCTTCGTCAAGACTCTGACCGGCAAGACGATCACGCTCGACG 825 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 | || || |||| ||| || || ||||| || ||||| |||||||| || ||||||| Sbjct 826 TCGAGCCTTCGGACAGCATTGACAATGTCAAGCAGAAGATCCAGGACAAGGAGGGAATCC 885 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 ||||||| ||||| || || ||||||||||| || |||||||| || || | || || Sbjct 886 CTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCT 945 Query 178090 CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||| |||| || || || || || || || || Sbjct 946 CGGACTACAACATCCAGAAGGAGTCGACGCTCCACCTCGT 985 >seq4761 Length=2180 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 ||||||||||||||| ||||| || || ||||||||||| || |||||||| || || | Sbjct 1656 AGGAATCCCTCCGGATCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCG 1597 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || ||| | || || ||| |||| || || || || ||||| || || Sbjct 1596 CACGCTTTCGGACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGT 1549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203383261496640