Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pythium_20insidiosum_20[genbank_20GCA_5F001950895.1_202016-12-27] 22,560 sequences; 37,673,126 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1079 149 6e-31 seq5064 134 1e-26 seq4761 109 5e-19 >seq1079 Length=6315 Score = 149 bits (164), Expect = 6e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||| || || ||||| ||||||||| ||||| ||||| ||| Sbjct 1003 CCACCACGAAGGCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAG 944 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||||||||| ||||||||||| || |||| || Sbjct 943 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGG 884 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||||| || | || | |||| | ||| || Sbjct 883 ATTCCCTCCTTGTCCTGGATCTTCTGCTT-GACATTGTCAATGCTGTCCGAAGGCTCGAC 825 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || | ||| ||||| || || ||||| ||||| ||||| |||||||| || Sbjct 824 GTCGAGCGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATCTT 774 >seq5064 Length=2045 Score = 134 bits (148), Expect = 1e-26 Identities = 155/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 41661 GCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCT 41720 ||||||| ||||||||| ||||| ||||| || || ||||| |||| |||||||||| Sbjct 1 GCAGCGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGGCCGTCCTCGAGCTGCT 60 Query 41721 TGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTT 41780 |||||||||| ||||||||||| || |||| || | | |||||||||| ||| || | Sbjct 61 TGCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTCT 120 Query 41781 GCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTC 41839 |||| || | || | | || | ||| || |||| || ||||| || ||||| Sbjct 121 GCTT-GACATTGTCAATGCTATCCGAGGGCTCGACGTCCAGGGTGATCGTCTTCCCCGTG 179 Query 41840 AGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| ||||| |||||||| || Sbjct 180 AGGGTCTTCACGAAGATCTGCATTTT 205 >seq4761 Length=2180 Score = 109 bits (120), Expect = 5e-19 Identities = 95/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || || || | ||| || |||||||| ||||||||| ||||| ||||| Sbjct 1528 CCACCACCACGCAGGCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCC 1587 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCG 41750 || || ||||| |||| |||||||||||||||||||| ||||||||||| || |||| Sbjct 1588 GAAAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCG 1645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462173630272000